Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 71

1.

CAGI experiments: Modeling sequence variant impact on gene splicing using predictions from computational tools.

Gotea V, Margolin G, Elnitski L.

Hum Mutat. 2019 May 8. doi: 10.1002/humu.23782. [Epub ahead of print]

PMID:
31066132
2.

Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression.

Huang D, Petrykowska HM, Miller BF, Elnitski L, Ovcharenko I.

Genome Res. 2019 Apr;29(4):657-667. doi: 10.1101/gr.247007.118. Epub 2019 Mar 18.

3.

The hypothesis of ultraconserved enhancer dispensability overturned.

Elnitski L, Ovcharenko I.

Genome Biol. 2018 May 8;19(1):57. doi: 10.1186/s13059-018-1433-1.

4.

Significant associations between driver gene mutations and DNA methylation alterations across many cancer types.

Chen YC, Gotea V, Margolin G, Elnitski L.

PLoS Comput Biol. 2017 Nov 10;13(11):e1005840. doi: 10.1371/journal.pcbi.1005840. eCollection 2017 Nov.

5.

SigSeeker: a peak-calling ensemble approach for constructing epigenetic signatures.

Lichtenberg J, Elnitski L, Bodine DM.

Bioinformatics. 2017 Sep 1;33(17):2615-2621. doi: 10.1093/bioinformatics/btx276.

6.

CpG island methylator phenotype in adenocarcinomas from the digestive tract: Methods, conclusions, and controversies.

Sánchez-Vega F, Gotea V, Chen YC, Elnitski L.

World J Gastrointest Oncol. 2017 Mar 15;9(3):105-120. doi: 10.4251/wjgo.v9.i3.105.

7.

Neuroanatomic, epigenetic and genetic differences in monozygotic twins discordant for attention deficit hyperactivity disorder.

Chen YC, Sudre G, Sharp W, Donovan F, Chandrasekharappa SC, Hansen N, Elnitski L, Shaw P.

Mol Psychiatry. 2018 Mar;23(3):683-690. doi: 10.1038/mp.2017.45. Epub 2017 Mar 21.

8.

The Emergence of Pan-Cancer CIMP and Its Elusive Interpretation.

Miller BF, Sánchez-Vega F, Elnitski L.

Biomolecules. 2016 Nov 22;6(4). pii: E45. Review.

9.

A Case of IL-7R Deficiency Caused by a Novel Synonymous Mutation and Implications for Mutation Screening in SCID Diagnosis.

Gallego-Bustos F, Gotea V, Ramos-Amador JT, Rodríguez-Pena R, Gil-Herrera J, Sastre A, Delmiro A, Rai G, Elnitski L, González-Granado LI, Allende LM.

Front Immunol. 2016 Oct 27;7:443. eCollection 2016.

10.

A Systems Biology Comparison of Ovarian Cancers Implicates Putative Somatic Driver Mutations through Protein-Protein Interaction Models.

Yang MQ, Elnitski L.

PLoS One. 2016 Oct 27;11(10):e0163353. doi: 10.1371/journal.pone.0163353. eCollection 2016.

11.

Robust Detection of DNA Hypermethylation of ZNF154 as a Pan-Cancer Locus with in Silico Modeling for Blood-Based Diagnostic Development.

Margolin G, Petrykowska HM, Jameel N, Bell DW, Young AC, Elnitski L.

J Mol Diagn. 2016 Mar;18(2):283-98. doi: 10.1016/j.jmoldx.2015.11.004. Epub 2016 Feb 5.

12.

Discovering Gene Regulatory Elements Using Coverage-Based Heuristics.

Al-Ouran R, Schmidt R, Naik A, Jones J, Drews F, Juedes D, Elnitski L, Welch L.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jul-Aug;15(4):1290-1300. doi: 10.1109/TCBB.2015.2496261. Epub 2015 Oct 30.

PMID:
26540692
13.

The functional relevance of somatic synonymous mutations in melanoma and other cancers.

Gotea V, Gartner JJ, Qutob N, Elnitski L, Samuels Y.

Pigment Cell Melanoma Res. 2015 Nov;28(6):673-84. doi: 10.1111/pcmr.12413. Review.

14.

Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype.

Sánchez-Vega F, Gotea V, Margolin G, Elnitski L.

Epigenetics Chromatin. 2015 Apr 17;8:14. doi: 10.1186/s13072-015-0007-7. eCollection 2015.

15.

Orthology-driven mapping of bidirectional promoters in human and mouse genomes.

Yang M, Elnitski L.

BMC Bioinformatics. 2014;15 Suppl 17:S1. doi: 10.1186/1471-2105-15-S17-S1. Epub 2014 Dec 16.

16.

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos J, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3366. No abstract available.

17.

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.

18.

Ascertaining regions affected by GC-biased gene conversion through weak-to-strong mutational hotspots.

Gotea V, Elnitski L.

Genomics. 2014 May-Jun;103(5-6):349-56. doi: 10.1016/j.ygeno.2014.04.001. Epub 2014 Apr 13.

19.

Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.

Ye Z, Chen Z, Lan X, Hara S, Sunkel B, Huang TH, Elnitski L, Wang Q, Jin VX.

Nucleic Acids Res. 2014 Mar;42(5):2856-69. doi: 10.1093/nar/gkt1338. Epub 2013 Dec 24.

20.

Recurrent patterns of DNA methylation in the ZNF154, CASP8, and VHL promoters across a wide spectrum of human solid epithelial tumors and cancer cell lines.

Sánchez-Vega F, Gotea V, Petrykowska HM, Margolin G, Krivak TC, DeLoia JA, Bell DW, Elnitski L.

Epigenetics. 2013 Dec;8(12):1355-72. doi: 10.4161/epi.26701. Epub 2013 Oct 22.

Supplemental Content

Loading ...
Support Center