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Items: 17

1.

Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing.

Gardner SN, Frey KG, Redden CL, Thissen JB, Allen JE, Allred AF, Dyer MD, Mokashi VP, Slezak TR.

BMC Res Notes. 2015 Nov 16;8:682. doi: 10.1186/s13104-015-1530-0.

2.

Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer.

Liang H, Cheung LW, Li J, Ju Z, Yu S, Stemke-Hale K, Dogruluk T, Lu Y, Liu X, Gu C, Guo W, Scherer SE, Carter H, Westin SN, Dyer MD, Verhaak RG, Zhang F, Karchin R, Liu CG, Lu KH, Broaddus RR, Scott KL, Hennessy BT, Mills GB.

Genome Res. 2012 Nov;22(11):2120-9. doi: 10.1101/gr.137596.112. Epub 2012 Oct 1.

3.

Comprehensive molecular portraits of human breast tumours.

Cancer Genome Atlas Network.

Nature. 2012 Oct 4;490(7418):61-70. doi: 10.1038/nature11412. Epub 2012 Sep 23.

4.

AMPK╬▒ modulation in cancer progression: multilayer integrative analysis of the whole transcriptome in Asian gastric cancer.

Kim YH, Liang H, Liu X, Lee JS, Cho JY, Cheong JH, Kim H, Li M, Downey TJ, Dyer MD, Sun Y, Sun J, Beasley EM, Chung HC, Noh SH, Weinstein JN, Liu CG, Powis G.

Cancer Res. 2012 May 15;72(10):2512-21. doi: 10.1158/0008-5472.CAN-11-3870. Epub 2012 Mar 20.

5.

High frequency of PIK3R1 and PIK3R2 mutations in endometrial cancer elucidates a novel mechanism for regulation of PTEN protein stability.

Cheung LW, Hennessy BT, Li J, Yu S, Myers AP, Djordjevic B, Lu Y, Stemke-Hale K, Dyer MD, Zhang F, Ju Z, Cantley LC, Scherer SE, Liang H, Lu KH, Broaddus RR, Mills GB.

Cancer Discov. 2011 Jul;1(2):170-85. doi: 10.1158/2159-8290.CD-11-0039. Epub 2011 Jun 7. Erratum in: Cancer Discov. 2012 Aug;2(8):750-1.

6.

Network-based prediction and analysis of HIV dependency factors.

Murali TM, Dyer MD, Badger D, Tyler BM, Katze MG.

PLoS Comput Biol. 2011 Sep;7(9):e1002164. doi: 10.1371/journal.pcbi.1002164. Epub 2011 Sep 22.

7.

Supervised learning and prediction of physical interactions between human and HIV proteins.

Dyer MD, Murali TM, Sobral BW.

Infect Genet Evol. 2011 Jul;11(5):917-23. doi: 10.1016/j.meegid.2011.02.022. Epub 2011 Mar 5.

8.

The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis.

Dyer MD, Neff C, Dufford M, Rivera CG, Shattuck D, Bassaganya-Riera J, Murali TM, Sobral BW.

PLoS One. 2010 Aug 9;5(8):e12089. doi: 10.1371/journal.pone.0012089.

9.

P58(IPK): a novel "CIHD" member of the host innate defense response against pathogenic virus infection.

Goodman AG, Fornek JL, Medigeshi GR, Perrone LA, Peng X, Dyer MD, Proll SC, Knoblaugh SE, Carter VS, Korth MJ, Nelson JA, Tumpey TM, Katze MG.

PLoS Pathog. 2009 May;5(5):e1000438. doi: 10.1371/journal.ppat.1000438. Epub 2009 May 22.

10.

Early upregulation of acute respiratory distress syndrome-associated cytokines promotes lethal disease in an aged-mouse model of severe acute respiratory syndrome coronavirus infection.

Rockx B, Baas T, Zornetzer GA, Haagmans B, Sheahan T, Frieman M, Dyer MD, Teal TH, Proll S, van den Brand J, Baric R, Katze MG.

J Virol. 2009 Jul;83(14):7062-74. doi: 10.1128/JVI.00127-09. Epub 2009 May 6. Erratum in: J Virol. 2009 Sep;83(17):9022.

11.

Impaired cholesterol biosynthesis in a neuronal cell line persistently infected with measles virus.

Robinzon S, Dafa-Berger A, Dyer MD, Paeper B, Proll SC, Teal TH, Rom S, Fishman D, Rager-Zisman B, Katze MG.

J Virol. 2009 Jun;83(11):5495-504. doi: 10.1128/JVI.01880-08. Epub 2009 Mar 18.

12.

PIG--the pathogen interaction gateway.

Driscoll T, Dyer MD, Murali TM, Sobral BW.

Nucleic Acids Res. 2009 Jan;37(Database issue):D647-50. doi: 10.1093/nar/gkn799. Epub 2008 Nov 4.

13.

The landscape of human proteins interacting with viruses and other pathogens.

Dyer MD, Murali TM, Sobral BW.

PLoS Pathog. 2008 Feb 8;4(2):e32. doi: 10.1371/journal.ppat.0040032.

14.

Computational prediction of host-pathogen protein-protein interactions.

Dyer MD, Murali TM, Sobral BW.

Bioinformatics. 2007 Jul 1;23(13):i159-66.

PMID:
17646292
15.

Use of handheld computer technology to monitor general practice residents' clinical experiences.

Dyer MD, Presler EA, Raybould TP, Burklow C, Smith TA.

J Dent Educ. 2006 Dec;70(12):1328-38.

16.

MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications.

Zhou CE, Smith J, Lam M, Zemla A, Dyer MD, Slezak T.

Nucleic Acids Res. 2007 Jan;35(Database issue):D391-4. Epub 2006 Nov 7.

17.

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

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