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Items: 1 to 20 of 87

1.

The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei.

Brito TL, Campos AB, Bastiaan von Meijenfeldt FA, Daniel JP, Ribeiro GB, Silva GGZ, Wilke DV, de Moraes DT, Dutilh BE, Meirelles PM, Trindade-Silva AE.

PLoS One. 2018 Nov 14;13(11):e0200437. doi: 10.1371/journal.pone.0200437. eCollection 2018.

2.

Molecular and Evolutionary Determinants of Bacteriophage Host Range.

de Jonge PA, Nobrega FL, Brouns SJJ, Dutilh BE.

Trends Microbiol. 2018 Sep 1. pii: S0966-842X(18)30178-1. doi: 10.1016/j.tim.2018.08.006. [Epub ahead of print] Review.

PMID:
30181062
3.

Use of whole genome sequencing to predict Mycobacterium tuberculosis drug resistance in Indonesia.

Chaidir L, Ruesen C, Dutilh BE, Ganiem AR, Andryani A, Apriani L, Huynen MA, Ruslami R, Hill PC, Crevel RV, Alisjahbana B.

J Glob Antimicrob Resist. 2018 Aug 29. pii: S2213-7165(18)30165-6. doi: 10.1016/j.jgar.2018.08.018. [Epub ahead of print]

PMID:
30172045
4.

Targeting mechanisms of tailed bacteriophages.

Nobrega FL, Vlot M, de Jonge PA, Dreesens LL, Beaumont HJE, Lavigne R, Dutilh BE, Brouns SJJ.

Nat Rev Microbiol. 2018 Dec;16(12):760-773. doi: 10.1038/s41579-018-0070-8. Review.

PMID:
30104690
5.

Establishing normal metabolism and differentiation in hepatocellular carcinoma cells by culturing in adult human serum.

Steenbergen R, Oti M, Ter Horst R, Tat W, Neufeldt C, Belovodskiy A, Chua TT, Cho WJ, Joyce M, Dutilh BE, Tyrrell DL.

Sci Rep. 2018 Aug 3;8(1):11685. doi: 10.1038/s41598-018-29763-2.

6.

Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.

Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, Zwart MP, Schönhuth A, Dutilh BE, Marz M.

Viruses. 2018 May 14;10(5). pii: E256. doi: 10.3390/v10050256.

7.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 May 12. doi: 10.1007/s00705-018-3847-1. [Epub ahead of print]

PMID:
29754305
8.

Towards predicting the environmental metabolome from metagenomics with a mechanistic model.

Garza DR, van Verk MC, Huynen MA, Dutilh BE.

Nat Microbiol. 2018 Apr;3(4):456-460. doi: 10.1038/s41564-018-0124-8. Epub 2018 Mar 12.

PMID:
29531366
9.

Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients.

Gigliucci F, von Meijenfeldt FAB, Knijn A, Michelacci V, Scavia G, Minelli F, Dutilh BE, Ahmad HM, Raangs GC, Friedrich AW, Rossen JWA, Morabito S.

Front Cell Infect Microbiol. 2018 Feb 6;8:25. doi: 10.3389/fcimb.2018.00025. eCollection 2018.

10.

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

Ruesen C, Chaidir L, van Laarhoven A, Dian S, Ganiem AR, Nebenzahl-Guimaraes H, Huynen MA, Alisjahbana B, Dutilh BE, van Crevel R.

BMC Genomics. 2018 Feb 5;19(1):122. doi: 10.1186/s12864-018-4498-z.

11.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
12.

Ecogenomics and Taxonomy of Cyanobacteria Phylum.

Walter JM, Coutinho FH, Dutilh BE, Swings J, Thompson FL, Thompson CC.

Front Microbiol. 2017 Nov 14;8:2132. doi: 10.3389/fmicb.2017.02132. eCollection 2017.

13.

Phage Genome Annotation Using the RAST Pipeline.

McNair K, Aziz RK, Pusch GD, Overbeek R, Dutilh BE, Edwards R.

Methods Mol Biol. 2018;1681:231-238. doi: 10.1007/978-1-4939-7343-9_17.

PMID:
29134599
14.

Temporal dynamics of uncultured viruses: a new dimension in viral diversity.

Arkhipova K, Skvortsov T, Quinn JP, McGrath JW, Allen CC, Dutilh BE, McElarney Y, Kulakov LA.

ISME J. 2018 Jan;12(1):199-211. doi: 10.1038/ismej.2017.157. Epub 2017 Oct 13.

PMID:
29027998
15.

Editorial: Virus Discovery by Metagenomics: The (Im)possibilities.

Dutilh BE, Reyes A, Hall RJ, Whiteson KL.

Front Microbiol. 2017 Sep 8;8:1710. doi: 10.3389/fmicb.2017.01710. eCollection 2017. No abstract available.

16.

Preservation of bacterial DNA in 10-year-old guaiac FOBT cards and FIT tubes.

Couto Furtado Albuquerque M, van Herwaarden Y, Kortman GAM, Dutilh BE, Bisseling T, Boleij A.

J Clin Pathol. 2017 Nov;70(11):994-996. doi: 10.1136/jclinpath-2017-204592. Epub 2017 Aug 22. No abstract available.

17.

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.

Nat Commun. 2017 Jul 5;8:15955. doi: 10.1038/ncomms15955.

18.

Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses.

Maat DS, Biggs T, Evans C, van Bleijswijk JDL, van der Wel NN, Dutilh BE, Brussaard CPD.

Viruses. 2017 Jun 2;9(6). pii: E134. doi: 10.3390/v9060134.

19.

Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses.

Motlagh AM, Bhattacharjee AS, Coutinho FH, Dutilh BE, Casjens SR, Goel RK.

Front Microbiol. 2017 Mar 3;8:352. doi: 10.3389/fmicb.2017.00352. eCollection 2017.

20.

Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria.

Speth DR, Lagkouvardos I, Wang Y, Qian PY, Dutilh BE, Jetten MSM.

Microb Ecol. 2017 Jul;74(1):1-5. doi: 10.1007/s00248-017-0929-7. Epub 2017 Jan 10.

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