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Items: 16

1.

Discovery and Enumeration of Organic-Chemical and Biomimetic Reaction Cycles within the Network of Chemistry.

Bajczyk MD, Dittwald P, Wołos A, Szymkuć S, Grzybowski BA.

Angew Chem Int Ed Engl. 2018 Feb 23;57(9):2367-2371. doi: 10.1002/anie.201712052. Epub 2018 Feb 6.

PMID:
29405528
2.

Predicting the outcomes of organic reactions via machine learning: are current descriptors sufficient?

Skoraczyński G, Dittwald P, Miasojedow B, Szymkuć S, Gajewska EP, Grzybowski BA, Gambin A.

Sci Rep. 2017 Jun 15;7(1):3582. doi: 10.1038/s41598-017-02303-0.

3.

Computer-Assisted Synthetic Planning: The End of the Beginning.

Szymkuć S, Gajewska EP, Klucznik T, Molga K, Dittwald P, Startek M, Bajczyk M, Grzybowski BA.

Angew Chem Int Ed Engl. 2016 May 10;55(20):5904-37. doi: 10.1002/anie.201506101. Epub 2016 Apr 8. Review.

PMID:
27062365
4.

On the Fine Isotopic Distribution and Limits to Resolution in Mass Spectrometry.

Dittwald P, Valkenborg D, Claesen J, Rockwood AL, Gambin A.

J Am Soc Mass Spectrom. 2015 Oct;26(10):1732-45. doi: 10.1007/s13361-015-1180-4. Epub 2015 Aug 12.

5.

A Priori Estimation of Organic Reaction Yields.

Emami FS, Vahid A, Wylie EK, Szymkuć S, Dittwald P, Molga K, Grzybowski BA.

Angew Chem Int Ed Engl. 2015 Sep 7;54(37):10797-801. doi: 10.1002/anie.201503890. Epub 2015 Jul 21.

PMID:
26215084
6.

Towards automated discrimination of lipids versus peptides from full scan mass spectra.

Dittwald P, Nghia VT, Harris GA, Caprioli RM, Van de Plas R, Laukens K, Gambin A, Valkenborg D.

EuPA Open Proteom. 2014 Sep 1;4:87-100.

7.

Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination.

Campbell IM, Gambin T, Dittwald P, Beck CR, Shuvarikov A, Hixson P, Patel A, Gambin A, Shaw CA, Rosenfeld JA, Stankiewicz P.

BMC Biol. 2014 Sep 23;12:74. doi: 10.1186/s12915-014-0074-4.

8.

BRAIN 2.0: time and memory complexity improvements in the algorithm for calculating the isotope distribution.

Dittwald P, Valkenborg D.

J Am Soc Mass Spectrom. 2014 Apr;25(4):588-94. doi: 10.1007/s13361-013-0796-5. Epub 2014 Feb 12.

9.

Comment on "Computation of isotopic peak center-mass distribution by fourier transform".

Hu H, Dittwald P, Zaia J, Valkenborg D.

Anal Chem. 2013 Dec 17;85(24):12189-12192. doi: 10.1021/ac402731h. Epub 2013 Dec 4. No abstract available.

10.

Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.

Shuvarikov A, Campbell IM, Dittwald P, Neill NJ, Bialer MG, Moore C, Wheeler PG, Wallace SE, Hannibal MC, Murray MF, Giovanni MA, Terespolsky D, Sodhi S, Cassina M, Viskochil D, Moghaddam B, Herman K, Brown CW, Beck CR, Gambin A, Cheung SW, Patel A, Lamb AN, Shaffer LG, Ellison JW, Ravnan JB, Stankiewicz P, Rosenfeld JA.

Hum Mutat. 2013 Oct;34(10):1415-23. doi: 10.1002/humu.22384. Epub 2013 Aug 13.

11.

NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.

Dittwald P, Gambin T, Szafranski P, Li J, Amato S, Divon MY, Rodríguez Rojas LX, Elton LE, Scott DA, Schaaf CP, Torres-Martinez W, Stevens AK, Rosenfeld JA, Agadi S, Francis D, Kang SH, Breman A, Lalani SR, Bacino CA, Bi W, Milosavljevic A, Beaudet AL, Patel A, Shaw CA, Lupski JR, Gambin A, Cheung SW, Stankiewicz P.

Genome Res. 2013 Sep;23(9):1395-409. doi: 10.1101/gr.152454.112. Epub 2013 May 8.

12.

BRAIN: a universal tool for high-throughput calculations of the isotopic distribution for mass spectrometry.

Dittwald P, Claesen J, Burzykowski T, Valkenborg D, Gambin A.

Anal Chem. 2013 Feb 19;85(4):1991-4. doi: 10.1021/ac303439m. Epub 2013 Jan 31.

PMID:
23350948
13.

Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder.

Szafranski P, Dharmadhikari AV, Brosens E, Gurha P, Kolodziejska KE, Zhishuo O, Dittwald P, Majewski T, Mohan KN, Chen B, Person RE, Tibboel D, de Klein A, Pinner J, Chopra M, Malcolm G, Peters G, Arbuckle S, Guiang SF 3rd, Hustead VA, Jessurun J, Hirsch R, Witte DP, Maystadt I, Sebire N, Fisher R, Langston C, Sen P, Stankiewicz P.

Genome Res. 2013 Jan;23(1):23-33. doi: 10.1101/gr.141887.112. Epub 2012 Oct 3.

14.

Inverted low-copy repeats and genome instability--a genome-wide analysis.

Dittwald P, Gambin T, Gonzaga-Jauregui C, Carvalho CM, Lupski JR, Stankiewicz P, Gambin A.

Hum Mutat. 2013 Jan;34(1):210-20. doi: 10.1002/humu.22217. Epub 2012 Oct 11.

15.

Inferring serum proteolytic activity from LC-MS/MS data.

Dittwald P, Ostrowski J, Karczmarski J, Gambin A.

BMC Bioinformatics. 2012 Apr 12;13 Suppl 5:S7. doi: 10.1186/1471-2105-13-S5-S7.

16.

An efficient method to calculate the aggregated isotopic distribution and exact center-masses.

Claesen J, Dittwald P, Burzykowski T, Valkenborg D.

J Am Soc Mass Spectrom. 2012 Apr;23(4):753-63. doi: 10.1007/s13361-011-0326-2. Epub 2012 Feb 15.

PMID:
22351289

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