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Items: 1 to 20 of 42

1.

Toward an Ensemble View of Chromatosome Structure: A Paradigm Shift from One to Many.

Öztürk MA, Cojocaru V, Wade RC.

Structure. 2018 Aug 7;26(8):1050-1057. doi: 10.1016/j.str.2018.05.009. Epub 2018 Jun 21. Review.

PMID:
29937356
2.

Dependence of Chromatosome Structure on Linker Histone Sequence and Posttranslational Modification.

Öztürk MA, Cojocaru V, Wade RC.

Biophys J. 2018 May 22;114(10):2363-2375. doi: 10.1016/j.bpj.2018.04.034. Epub 2018 May 11.

3.

DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1.

Wang X, Srivastava Y, Jankowski A, Malik V, Wei Y, Del Rosario RC, Cojocaru V, Prabhakar S, Jauch R.

Nucleic Acids Res. 2018 Jun 20;46(11):5470-5486. doi: 10.1093/nar/gky259.

4.

Coop-Seq Analysis Demonstrates that Sox2 Evokes Latent Specificities in the DNA Recognition by Pax6.

Hu C, Malik V, Chang YK, Veerapandian V, Srivastava Y, Huang YH, Hou L, Cojocaru V, Stormo GD, Jauch R.

J Mol Biol. 2017 Nov 24;429(23):3626-3634. doi: 10.1016/j.jmb.2017.10.013. Epub 2017 Oct 16.

PMID:
29050852
5.

Characterization and In Vitro and In Vivo Assessment of a Novel Cellulose Acetate-Coated Mg-Based Alloy for Orthopedic Applications.

Neacsu P, Staras AI, Voicu SI, Ionascu I, Soare T, Uzun S, Cojocaru VD, Pandele AM, Croitoru SM, Miculescu F, Cotrut CM, Dan I, Cimpean A.

Materials (Basel). 2017 Jun 22;10(7). pii: E686. doi: 10.3390/ma10070686.

6.

Changing POU dimerization preferences converts Oct6 into a pluripotency inducer.

Jerabek S, Ng CK, Wu G, Arauzo-Bravo MJ, Kim KP, Esch D, Malik V, Chen Y, Velychko S, MacCarthy CM, Yang X, Cojocaru V, Schöler HR, Jauch R.

EMBO Rep. 2017 Feb;18(2):319-333. doi: 10.15252/embr.201642958. Epub 2016 Dec 22.

7.

Conformational selection and dynamic adaptation upon linker histone binding to the nucleosome.

Öztürk MA, Pachov GV, Wade RC, Cojocaru V.

Nucleic Acids Res. 2016 Aug 19;44(14):6599-613. doi: 10.1093/nar/gkw514. Epub 2016 Jun 7.

8.

Tunable terahertz wave generation through a bimodal laser diode and plasmonic photomixer.

Yang SH, Watts R, Li X, Wang N, Cojocaru V, O'Gorman J, Barry LP, Jarrahi M.

Opt Express. 2015 Nov 30;23(24):31206-15. doi: 10.1364/OE.23.031206.

PMID:
26698749
9.

Ligand tunnels in T. brucei and human CYP51: Insights for parasite-specific drug design.

Yu X, Nandekar P, Mustafa G, Cojocaru V, Lepesheva GI, Wade RC.

Biochim Biophys Acta. 2016 Jan;1860(1 Pt A):67-78. doi: 10.1016/j.bbagen.2015.10.015. Epub 2015 Oct 19.

10.

Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency.

Tapia N, MacCarthy C, Esch D, Gabriele Marthaler A, Tiemann U, Araúzo-Bravo MJ, Jauch R, Cojocaru V, Schöler HR.

Sci Rep. 2015 Aug 28;5:13533. doi: 10.1038/srep13533.

11.

Advances in the treatment of ocular dryness associated with Sjögren׳s syndrome.

Ciurtin C, Ostas A, Cojocaru VM, Walsh SB, Isenberg DA.

Semin Arthritis Rheum. 2015 Dec;45(3):321-7. doi: 10.1016/j.semarthrit.2015.06.007. Epub 2015 Jun 18. Review.

PMID:
26216545
12.

Cooperative DNA Recognition Modulated by an Interplay between Protein-Protein Interactions and DNA-Mediated Allostery.

Merino F, Bouvier B, Cojocaru V.

PLoS Comput Biol. 2015 Jun 11;11(6):e1004287. doi: 10.1371/journal.pcbi.1004287. eCollection 2015 Jun.

13.

Dynamics of CYP51: implications for function and inhibitor design.

Yu X, Cojocaru V, Mustafa G, Salo-Ahen OM, Lepesheva GI, Wade RC.

J Mol Recognit. 2015 Feb;28(2):59-73. doi: 10.1002/jmr.2412. Epub 2015 Jan 20.

14.

DNA-mediated cooperativity facilitates the co-selection of cryptic enhancer sequences by SOX2 and PAX6 transcription factors.

Narasimhan K, Pillay S, Huang YH, Jayabal S, Udayasuryan B, Veerapandian V, Kolatkar P, Cojocaru V, Pervushin K, Jauch R.

Nucleic Acids Res. 2015 Feb 18;43(3):1513-28. doi: 10.1093/nar/gku1390. Epub 2015 Jan 10.

15.

Structural basis for the SOX-dependent genomic redistribution of OCT4 in stem cell differentiation.

Merino F, Ng CKL, Veerapandian V, Schöler HR, Jauch R, Cojocaru V.

Structure. 2014 Sep 2;22(9):1274-1286. doi: 10.1016/j.str.2014.06.014. Epub 2014 Aug 7.

16.

OCT4: dynamic DNA binding pioneers stem cell pluripotency.

Jerabek S, Merino F, Schöler HR, Cojocaru V.

Biochim Biophys Acta. 2014 Mar;1839(3):138-54. doi: 10.1016/j.bbagrm.2013.10.001. Epub 2013 Oct 18. Review.

PMID:
24145198
17.

Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria.

Veith N, Feldman-Salit A, Cojocaru V, Henrich S, Kummer U, Wade RC.

PLoS Comput Biol. 2013;9(7):e1003159. doi: 10.1371/journal.pcbi.1003159. Epub 2013 Jul 25. Erratum in: PLoS Comput Biol. 2014 Jun;10(6):e1003732.

18.

Regulation of the activity of lactate dehydrogenases from four lactic acid bacteria.

Feldman-Salit A, Hering S, Messiha HL, Veith N, Cojocaru V, Sieg A, Westerhoff HV, Kreikemeyer B, Wade RC, Fiedler T.

J Biol Chem. 2013 Jul 19;288(29):21295-306. doi: 10.1074/jbc.M113.458265. Epub 2013 May 17.

19.

Conformational diversity and ligand tunnels of mammalian cytochrome P450s.

Yu X, Cojocaru V, Wade RC.

Biotechnol Appl Biochem. 2013 Jan-Feb;60(1):134-45. doi: 10.1002/bab.1074. Review.

PMID:
23587001
20.

A unique Oct4 interface is crucial for reprogramming to pluripotency.

Esch D, Vahokoski J, Groves MR, Pogenberg V, Cojocaru V, Vom Bruch H, Han D, Drexler HC, Araúzo-Bravo MJ, Ng CK, Jauch R, Wilmanns M, Schöler HR.

Nat Cell Biol. 2013 Mar;15(3):295-301. doi: 10.1038/ncb2680. Epub 2013 Feb 3.

PMID:
23376973

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