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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2004 2
2006 3
2007 3
2008 2
2009 3
2010 1
2011 1
2012 2
2013 1
2015 1
2024 0

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19 results

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Page 1
Motif-specific sampling of phosphoproteomes.
Ruse CI, McClatchy DB, Lu B, Cociorva D, Motoyama A, Park SK, Yates JR 3rd. Ruse CI, et al. Among authors: cociorva d. J Proteome Res. 2008 May;7(5):2140-50. doi: 10.1021/pr800147u. J Proteome Res. 2008. PMID: 18452278 Free PMC article.
Toward objective evaluation of proteomic algorithms.
Yates JR 3rd, Park SK, Delahunty CM, Xu T, Savas JN, Cociorva D, Carvalho PC. Yates JR 3rd, et al. Among authors: cociorva d. Nat Methods. 2012 Apr 27;9(5):455-6. doi: 10.1038/nmeth.1983. Nat Methods. 2012. PMID: 22543378 Free PMC article. No abstract available.
YADA: a tool for taking the most out of high-resolution spectra.
Carvalho PC, Xu T, Han X, Cociorva D, Barbosa VC, Yates JR 3rd. Carvalho PC, et al. Among authors: cociorva d. Bioinformatics. 2009 Oct 15;25(20):2734-6. doi: 10.1093/bioinformatics/btp489. Epub 2009 Aug 14. Bioinformatics. 2009. PMID: 19684088 Free PMC article.
Search engine processor: Filtering and organizing peptide spectrum matches.
Carvalho PC, Fischer JS, Xu T, Cociorva D, Balbuena TS, Valente RH, Perales J, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Among authors: cociorva d. Proteomics. 2012 Apr;12(7):944-9. doi: 10.1002/pmic.201100529. Proteomics. 2012. PMID: 22311825 Free PMC article.
Can the false-discovery rate be misleading?
Barboza R, Cociorva D, Xu T, Barbosa VC, Perales J, Valente RH, França FM, Yates JR 3rd, Carvalho PC. Barboza R, et al. Among authors: cociorva d. Proteomics. 2011 Oct;11(20):4105-8. doi: 10.1002/pmic.201100297. Epub 2011 Sep 6. Proteomics. 2011. PMID: 21834134 Free PMC article.
ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity.
Xu T, Park SK, Venable JD, Wohlschlegel JA, Diedrich JK, Cociorva D, Lu B, Liao L, Hewel J, Han X, Wong CCL, Fonslow B, Delahunty C, Gao Y, Shah H, Yates JR 3rd. Xu T, et al. Among authors: cociorva d. J Proteomics. 2015 Nov 3;129:16-24. doi: 10.1016/j.jprot.2015.07.001. Epub 2015 Jul 11. J Proteomics. 2015. PMID: 26171723 Free PMC article.
19 results