Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis

Nat Genet. 2017 Oct;49(10):1546-1552. doi: 10.1038/ng.3937. Epub 2017 Aug 21.

Abstract

Disruption of gene silencing by Polycomb protein complexes leads to homeotic transformations and altered developmental-phase identity in plants. Here we define short genomic fragments, known as Polycomb response elements (PREs), that direct Polycomb repressive complex 2 (PRC2) placement at developmental genes regulated by silencing in Arabidopsis thaliana. We identify transcription factor families that bind to these PREs, colocalize with PRC2 on chromatin, physically interact with and recruit PRC2, and are required for PRC2-mediated gene silencing in vivo. Two of the cis sequence motifs enriched in the PREs are cognate binding sites for the identified transcription factors and are necessary and sufficient for PRE activity. Thus PRC2 recruitment in Arabidopsis relies in large part on binding of trans-acting factors to cis-localized DNA sequence motifs.

MeSH terms

  • Amino Acid Motifs
  • Arabidopsis / genetics*
  • Arabidopsis / metabolism
  • Arabidopsis Proteins / biosynthesis
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / physiology*
  • Binding Sites
  • DNA, Plant / genetics
  • DNA, Plant / metabolism
  • Epigenetic Repression / genetics*
  • Flowers / growth & development
  • Gene Expression Regulation, Plant*
  • Gene Ontology
  • Gene Silencing*
  • High-Throughput Screening Assays
  • Multigene Family
  • Plant Leaves / ultrastructure
  • Plants, Genetically Modified
  • Polycomb Repressive Complex 2 / physiology*
  • Polycomb-Group Proteins / physiology*
  • Protein Binding
  • Protein Interaction Mapping
  • Response Elements / genetics*
  • Transcription Factors / metabolism

Substances

  • Arabidopsis Proteins
  • DNA, Plant
  • Polycomb-Group Proteins
  • Transcription Factors
  • Polycomb Repressive Complex 2