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Items: 1 to 20 of 128

1.

Alliance of Genome Resources Portal: unified model organism research platform.

Alliance of Genome Resources Consortium .

Nucleic Acids Res. 2019 Sep 25. pii: gkz813. doi: 10.1093/nar/gkz813. [Epub ahead of print]

PMID:
31552413
2.

Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies.

Song G, Lee J, Kim J, Kang S, Lee H, Kwon D, Lee D, Lang GI, Cherry JM, Kim J.

PLoS One. 2019 Aug 27;14(8):e0221858. doi: 10.1371/journal.pone.0221858. eCollection 2019.

3.

Antithrombotic Therapy after Acute Coronary Syndrome or PCI in Atrial Fibrillation.

Lopes RD, Heizer G, Aronson R, Vora AN, Massaro T, Mehran R, Goodman SG, Windecker S, Darius H, Li J, Averkov O, Bahit MC, Berwanger O, Budaj A, Hijazi Z, Parkhomenko A, Sinnaeve P, Storey RF, Thiele H, Vinereanu D, Granger CB, Alexander JH; AUGUSTUS Investigators.

N Engl J Med. 2019 Apr 18;380(16):1509-1524. doi: 10.1056/NEJMoa1817083. Epub 2019 Mar 17.

4.

Integration of macromolecular complex data into the Saccharomyces Genome Database.

Wong ED, Skrzypek MS, Weng S, Binkley G, Meldal BHM, Perfetto L, Orchard SE, Engel SR, Cherry JM; SGD Project.

Database (Oxford). 2019 Jan 1;2019. doi: 10.1093/database/baz008.

5.

RNAcentral: a hub of information for non-coding RNA sequences.

The RNAcentral Consortium.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1250-D1251. doi: 10.1093/nar/gky1206. No abstract available.

6.

RNAcentral: a hub of information for non-coding RNA sequences.

The RNAcentral Consortium .

Nucleic Acids Res. 2019 Jan 8;47(D1):D221-D229. doi: 10.1093/nar/gky1034. Erratum in: Nucleic Acids Res. 2019 Jan 8;47(D1):D1250-D1251.

7.

Prevention of data duplication for high throughput sequencing repositories.

Gabdank I, Chan ET, Davidson JM, Hilton JA, Davis CA, Baymuradov UK, Narayanan A, Onate KC, Graham K, Miyasato SR, Dreszer TR, Strattan JS, Jolanki O, Tanaka FY, Hitz BC, Sloan CA, Cherry JM.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay008.

8.

Updated regulation curation model at the Saccharomyces Genome Database.

Engel SR, Skrzypek MS, Hellerstedt ST, Wong ED, Nash RS, Weng S, Binkley G, Sheppard TK, Karra K, Cherry JM.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay007.

9.

Saccharomyces genome database informs human biology.

Skrzypek MS, Nash RS, Wong ED, MacPherson KA, Hellerstedt ST, Engel SR, Karra K, Weng S, Sheppard TK, Binkley G, Simison M, Miyasato SR, Cherry JM.

Nucleic Acids Res. 2018 Jan 4;46(D1):D736-D742. doi: 10.1093/nar/gkx1112.

10.

The Encyclopedia of DNA elements (ENCODE): data portal update.

Davis CA, Hitz BC, Sloan CA, Chan ET, Davidson JM, Gabdank I, Hilton JA, Jain K, Baymuradov UK, Narayanan AK, Onate KC, Graham K, Miyasato SR, Dreszer TR, Strattan JS, Jolanki O, Tanaka FY, Cherry JM.

Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801. doi: 10.1093/nar/gkx1081.

11.

Novel near-diploid ovarian cancer cell line derived from a highly aneuploid metastatic ovarian tumor.

Rozenblum E, Sotelo-Silveira JR, Kim GY, Zhu JY, Lau CC, McNeil N, Korolevich S, Liao H, Cherry JM, Munroe DJ, Ried T, Meltzer PS, Kuehl WM, Roschke AV.

PLoS One. 2017 Aug 7;12(8):e0182610. doi: 10.1371/journal.pone.0182610. eCollection 2017.

12.

Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed by the Clinical Genome Resource.

Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, Goldstein J, Ghosh R, Seifert BA, Sneddon TP, Wright MW, Milko LV, Cherry JM, Giovanni MA, Murray MF, O'Daniel JM, Ramos EM, Santani AB, Scott AF, Plon SE, Rehm HL, Martin CL, Berg JS.

Am J Hum Genet. 2017 Jun 1;100(6):895-906. doi: 10.1016/j.ajhg.2017.04.015. Epub 2017 May 25.

13.

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.

Hitz BC, Rowe LD, Podduturi NR, Glick DI, Baymuradov UK, Malladi VS, Chan ET, Davidson JM, Gabdank I, Narayana AK, Onate KC, Hilton J, Ho MC, Lee BT, Miyasato SR, Dreszer TR, Sloan CA, Strattan JS, Tanaka FY, Hong EL, Cherry JM.

PLoS One. 2017 Apr 12;12(4):e0175310. doi: 10.1371/journal.pone.0175310. eCollection 2017.

14.

Curated protein information in the Saccharomyces genome database.

Hellerstedt ST, Nash RS, Weng S, Paskov KM, Wong ED, Karra K, Engel SR, Cherry JM.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax011.

15.

Outreach and online training services at the Saccharomyces Genome Database.

MacPherson KA, Starr B, Wong ED, Dalusag KS, Hellerstedt ST, Lang OW, Nash RS, Skrzypek MS, Engel SR, Cherry JM.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax002.

16.

Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.

Kramer MH, Farré JC, Mitra K, Yu MK, Ono K, Demchak B, Licon K, Flagg M, Balakrishnan R, Cherry JM, Subramani S, Ideker T.

Mol Cell. 2017 Feb 16;65(4):761-774.e5. doi: 10.1016/j.molcel.2016.12.024. Epub 2017 Jan 26.

17.

RNAcentral: a comprehensive database of non-coding RNA sequences.

The RNAcentral Consortium, Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, Lau BY, Williams KP, Chan PP, Lowe TM, Cannone JJ, Gutell R, Machnicka MA, Bujnicki JM, Yoshihama M, Kenmochi N, Chai B, Cole JR, Szymanski M, Karlowski WM, Wood V, Huala E, Berardini TZ, Zhao Y, Chen R, Zhu W, Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG, Ma L, Zhang Z, Puetz J, Stadler PF, McDonald D, Basu S, Fey P, Engel SR, Cherry JM, Volders PJ, Mestdagh P, Wower J, Clark MB, Quek XC, Dinger ME.

Nucleic Acids Res. 2017 Jan 4;45(D1):D128-D134. doi: 10.1093/nar/gkw1008. Epub 2016 Oct 28.

18.

XenMine: A genomic interaction tool for the Xenopus community.

Reid CD, Karra K, Chang J, Piskol R, Li Q, Li JB, Cherry JM, Baker JC.

Dev Biol. 2017 Jun 15;426(2):155-164. doi: 10.1016/j.ydbio.2016.02.034. Epub 2016 May 4.

19.

From one to many: expanding the Saccharomyces cerevisiae reference genome panel.

Engel SR, Weng S, Binkley G, Paskov K, Song G, Cherry JM.

Database (Oxford). 2016 Mar 17;2016. pii: baw020. doi: 10.1093/database/baw020. Print 2016.

20.

Principles of metadata organization at the ENCODE data coordination center.

Hong EL, Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee BT, Rowe LD, Dreszer TR, Roe GR, Podduturi NR, Tanaka F, Hilton JA, Cherry JM.

Database (Oxford). 2016 Mar 15;2016. pii: baw001. doi: 10.1093/database/baw001. Print 2016.

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