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Items: 1 to 20 of 59

1.

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.

Paez-Espino D, Roux S, Chen IA, Palaniappan K, Ratner A, Chu K, Huntemann M, Reddy TBK, Pons JC, Llabrés M, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2018 Nov 8. doi: 10.1093/nar/gky1127. [Epub ahead of print]

PMID:
30407573
2.

The association between Type 1 diabetes mellitus and periodontal diseases.

Sun KT, Chen SC, Lin CL, Hsu JT, Chen IA, Wu IT, Palanisamy K, Shen TC, Li CY.

J Formos Med Assoc. 2018 Oct 31. pii: S0929-6646(18)30594-1. doi: 10.1016/j.jfma.2018.10.012. [Epub ahead of print]

3.

Genomes OnLine database (GOLD) v.7: updates and new features.

Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Katta HY, Mojica A, Chen IA, Kyrpides NC, Reddy T.

Nucleic Acids Res. 2018 Oct 24. doi: 10.1093/nar/gky977. [Epub ahead of print]

PMID:
30357420
4.

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

Chen IA, Chu K, Palaniappan K, Pillay M, Ratner A, Huang J, Huntemann M, Varghese N, White JR, Seshadri R, Smirnova T, Kirton E, Jungbluth SP, Woyke T, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2018 Oct 5. doi: 10.1093/nar/gky901. [Epub ahead of print]

PMID:
30289528
5.

Lipid vesicles chaperone an encapsulated RNA aptamer.

Saha R, Verbanic S, Chen IA.

Nat Commun. 2018 Jun 13;9(1):2313. doi: 10.1038/s41467-018-04783-8.

6.

Analysis of Evolutionarily Independent Protein-RNA Complexes Yields a Criterion to Evaluate the Relevance of Prebiotic Scenarios.

Blanco C, Bayas M, Yan F, Chen IA.

Curr Biol. 2018 Feb 19;28(4):526-537.e5. doi: 10.1016/j.cub.2018.01.014. Epub 2018 Feb 1.

PMID:
29398222
7.

Analysis of in vitro evolution reveals the underlying distribution of catalytic activity among random sequences.

Pressman A, Moretti JE, Campbell GW, Müller UF, Chen IA.

Nucleic Acids Res. 2017 Oct 13;45(18):10922. doi: 10.1093/nar/gkx816. No abstract available.

8.

Rituximab as treatment for anti-MuSK myasthenia gravis: Multicenter blinded prospective review.

Hehir MK, Hobson-Webb LD, Benatar M, Barnett C, Silvestri NJ, Howard JF Jr, Howard D, Visser A, Crum BA, Nowak R, Beekman R, Kumar A, Ruzhansky K, Chen IA, Pulley MT, LaBoy SM, Fellman MA, Greene SM, Pasnoor M, Burns TM.

Neurology. 2017 Sep 5;89(10):1069-1077. doi: 10.1212/WNL.0000000000004341. Epub 2017 Aug 11.

PMID:
28801338
9.

Analysis of in vitro evolution reveals the underlying distribution of catalytic activity among random sequences.

Pressman A, Moretti JE, Campbell GW, Müller UF, Chen IA.

Nucleic Acids Res. 2017 Aug 21;45(14):8167-8179. doi: 10.1093/nar/gkx540.

10.

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.

Hadjithomas M, Chen IA, Chu K, Huang J, Ratner A, Palaniappan K, Andersen E, Markowitz V, Kyrpides NC, Ivanova NN.

Nucleic Acids Res. 2017 Jan 4;45(D1):D560-D565. doi: 10.1093/nar/gkw1103. Epub 2016 Nov 29.

11.

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

Paez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, Szeto E, Pillay M, Huang J, Markowitz VM, Nielsen T, Huntemann M, K Reddy TB, Pavlopoulos GA, Sullivan MB, Campbell BJ, Chen F, McMahon K, Hallam SJ, Denef V, Cavicchioli R, Caffrey SM, Streit WR, Webster J, Handley KM, Salekdeh GH, Tsesmetzis N, Setubal JC, Pope PB, Liu WT, Rivers AR, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D457-D465. doi: 10.1093/nar/gkw1030. Epub 2016 Oct 30.

12.

IMG/M: integrated genome and metagenome comparative data analysis system.

Chen IA, Markowitz VM, Chu K, Palaniappan K, Szeto E, Pillay M, Ratner A, Huang J, Andersen E, Huntemann M, Varghese N, Hadjithomas M, Tennessen K, Nielsen T, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D507-D516. doi: 10.1093/nar/gkw929. Epub 2016 Oct 13.

13.

From underwear to non-equilibrium thermodynamics: physical chemistry informs the origin of life.

Chen IA, de Vries MS.

Phys Chem Chem Phys. 2016 Jul 27;18(30):20005-6. doi: 10.1039/c6cp90169g. No abstract available.

PMID:
27388780
14.

What motivates individuals with sickle cell disease to talk with others about their illness? Reasons for and against sickle cell disease disclosure.

Derlega VJ, Maduro RS, Janda LH, Chen IA, Goodman BM 3rd.

J Health Psychol. 2018 Jan;23(1):103-113. doi: 10.1177/1359105316649786. Epub 2016 May 26.

PMID:
27235142
15.

Computational analysis of fitness landscapes and evolutionary networks from in vitro evolution experiments.

Xulvi-Brunet R, Campbell GW, Rajamani S, Jiménez JI, Chen IA.

Methods. 2016 Aug 15;106:86-96. doi: 10.1016/j.ymeth.2016.05.012. Epub 2016 May 19.

PMID:
27211010
16.

Size-dependent dielectrophoretic crossover frequency of spherical particles.

Weng PY, Chen IA, Yeh CK, Chen PY, Juang JY.

Biomicrofluidics. 2016 Feb 11;10(1):011909. doi: 10.1063/1.4941853. eCollection 2016 Jan.

17.

Origin of Life: Protocells Red in Tooth and Claw.

Saha R, Chen IA.

Curr Biol. 2015 Dec 21;25(24):R1175-7. doi: 10.1016/j.cub.2015.11.007.

18.

The RNA World as a Model System to Study the Origin of Life.

Pressman A, Blanco C, Chen IA.

Curr Biol. 2015 Oct 5;25(19):R953-63. doi: 10.1016/j.cub.2015.06.016. Review.

19.

Ten years of maintaining and expanding a microbial genome and metagenome analysis system.

Markowitz VM, Chen IA, Chu K, Pati A, Ivanova NN, Kyrpides NC.

Trends Microbiol. 2015 Nov;23(11):730-741. doi: 10.1016/j.tim.2015.07.012. Epub 2015 Oct 14. Review.

PMID:
26439299
20.

Prebiotic chemistry: Replicating towards complexity.

Chen IA.

Nat Chem. 2015 Mar;7(3):191-2. doi: 10.1038/nchem.2188. No abstract available.

PMID:
25698324

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