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Items: 1 to 20 of 3905

1.

Zebrafish macroH2A variants have distinct embryo localization and function.

Gonzalez-Munoz E, Arboleda-Estudillo Y, Chanumolu SK, Otu HH, Cibelli JB.

Sci Rep. 2019 Jun 14;9(1):8632. doi: 10.1038/s41598-019-45058-6.

2.

Correction to: VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.

Holding AN, Giorgi FM, Donnelly A, Cullen AE, Nagarajan S, Selth LA, Markowetz F.

Genome Biol. 2019 Jun 14;20(1):122. doi: 10.1186/s13059-019-1733-0.

3.

HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.

Tarbell ED, Liu T.

Nucleic Acids Res. 2019 Jun 14. pii: gkz533. doi: 10.1093/nar/gkz533. [Epub ahead of print]

PMID:
31199868
4.

Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding.

Szczesnik T, Ho JWK, Sherwood R.

Epigenetics Chromatin. 2019 Jun 13;12(1):36. doi: 10.1186/s13072-019-0273-x.

5.

Adipose-Derived Stem Cells (ASCs) and Ceiling Culture-Derived Preadipocytes (ccdPAs) Cultured from Subcutaneous Fat Tissue Differ in their Epigenetic Characteristics and Osteogenic Potential.

Sasahara Y, Kubota Y, Kosaka K, Adachi N, Yamaji Y, Nagano H, Akita S, Kuroda M, Tanaka T, Bujo H, Mitsukawa N.

Plast Reconstr Surg. 2019 Jun 6. doi: 10.1097/PRS.0000000000005913. [Epub ahead of print]

PMID:
31181041
6.

Learning common and specific patterns from data of multiple interrelated biological scenarios with matrix factorization.

Zhang L, Zhang S.

Nucleic Acids Res. 2019 Jun 8. pii: gkz488. doi: 10.1093/nar/gkz488. [Epub ahead of print]

PMID:
31175825
7.

Histone demethylase Kdm2a regulates germ cell genes and endogenous retroviruses in embryonic stem cells.

Fu E, Shen J, Dong Z, Zhang W, Zhang Y, Chen F, Cheng Z, Zhao X, Shuai L, Lu X.

Epigenomics. 2019 Jun 7. doi: 10.2217/epi-2018-0126. [Epub ahead of print]

PMID:
31172793
8.

PTEN interacts with the transcription machinery on chromatin and regulates RNA polymerase II-mediated transcription.

Steinbach N, Hasson D, Mathur D, Stratikopoulos EE, Sachidanandam R, Bernstein E, Parsons RE.

Nucleic Acids Res. 2019 Apr 24. pii: gkz272. doi: 10.1093/nar/gkz272. [Epub ahead of print]

PMID:
31169889
9.

aFARP-ChIP-seq, a convenient and reliable method for genome profiling in as few as 100 cells with a capability for multiplexing ChIP-seq.

Liu W, Yue S, Zheng X, Hu M, Cao J, Zheng Y.

Epigenetics. 2019 Jun 6:1-17. doi: 10.1080/15592294.2019.1621139. [Epub ahead of print]

PMID:
31169445
10.

TAF family proteins and MEF2C are essential for Epstein-Barr virus MYC super-enhancer activity.

Wang C, Jiang S, Zhang L, Li D, Liang J, Narita Y, Hou I, Zhong Q, Gewurz BE, Teng M, Zhao B.

J Virol. 2019 Jun 5. pii: JVI.00513-19. doi: 10.1128/JVI.00513-19. [Epub ahead of print]

PMID:
31167905
11.

A practical guide to methods controlling false discoveries in computational biology.

Korthauer K, Kimes PK, Duvallet C, Reyes A, Subramanian A, Teng M, Shukla C, Alm EJ, Hicks SC.

Genome Biol. 2019 Jun 4;20(1):118. doi: 10.1186/s13059-019-1716-1.

12.

COUP-TFII is a modulator of cell-type-specific genetic programs based on genomic localization maps.

Erdos E, Balint BL.

J Biotechnol. 2019 May 31. pii: S0168-1656(19)30469-9. doi: 10.1016/j.jbiotec.2019.05.305. [Epub ahead of print]

PMID:
31158411
13.

Sox7 regulates lineage decisions in cardiovascular progenitor cells.

Doyle MJ, Magli A, Estharabadi N, Amundsen D, Mills LJ, Martin CM.

Stem Cells Dev. 2019 Jun 1. doi: 10.1089/scd.2019.0040. [Epub ahead of print]

PMID:
31154937
14.

Increased acetylation of H3K14 in the genomic regions that encode trained immunity enzymes in lysophosphatidylcholine-activated human aortic endothelial cells - Novel qualification markers for chronic disease risk factors and conditional DAMPs.

Lu Y, Sun Y, Drummer C 4th, Nanayakkara GK, Shao Y, Saaoud F, Johnson C, Zhang R, Yu D, Li X, Yang WY, Yu J, Jiang X, Choi ET, Wang H, Yang X.

Redox Biol. 2019 May 22;24:101221. doi: 10.1016/j.redox.2019.101221. [Epub ahead of print]

15.

High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer.

Grosselin K, Durand A, Marsolier J, Poitou A, Marangoni E, Nemati F, Dahmani A, Lameiras S, Reyal F, Frenoy O, Pousse Y, Reichen M, Woolfe A, Brenan C, Griffiths AD, Vallot C, GĂ©rard A.

Nat Genet. 2019 Jun;51(6):1060-1066. doi: 10.1038/s41588-019-0424-9. Epub 2019 May 31.

PMID:
31152164
16.

High OGT activity is essential for MYC-driven proliferation of prostate cancer cells.

Itkonen HM, Urbanucci A, Martin SE, Khan A, Mathelier A, Thiede B, Walker S, Mills IG.

Theranostics. 2019 Apr 12;9(8):2183-2197. doi: 10.7150/thno.30834. eCollection 2019.

17.

Analysis of the Chromosomal Localization of Yeast SMC Complexes by Chromatin Immunoprecipitation.

Makrantoni V, Robertson D, Marston AL.

Methods Mol Biol. 2019;2004:119-138. doi: 10.1007/978-1-4939-9520-2_10.

PMID:
31147914
18.

Profiling of histone 3 lysine 27 acetylation reveals its role in a chronic DSS-induced colitis mouse model.

Chen M, Li Q, Cao N, Deng Y, Li L, Zhao Q, Wu M, Ye M.

Mol Omics. 2019 May 31. doi: 10.1039/c9mo00070d. [Epub ahead of print]

PMID:
31147658
19.

FOX-A1 contributes to acquisition of chemoresistance in human lung adenocarcinoma via transactivation of SOX5.

Chen D, Wang R, Yu C, Cao F, Zhang X, Yan F, Chen L, Zhu H, Yu Z, Feng J.

EBioMedicine. 2019 May 27. pii: S2352-3964(19)30354-8. doi: 10.1016/j.ebiom.2019.05.046. [Epub ahead of print]

20.

AtHSFA7b positively mediates salt stress tolerance by binding to an E-box like motif to regulate gene expression.

Zang D, Wang J, Zhang X, Liu Z, Wang Y.

J Exp Bot. 2019 May 30. pii: erz261. doi: 10.1093/jxb/erz261. [Epub ahead of print]

PMID:
31145794

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