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Items: 1 to 20 of 164

1.

Raspberry Pi-powered imaging for plant phenotyping.

Tovar JC, Hoyer JS, Lin A, Tielking A, Callen ST, Elizabeth Castillo S, Miller M, Tessman M, Fahlgren N, Carrington JC, Nusinow DA, Gehan MA.

Appl Plant Sci. 2018 Mar 31;6(3):e1031. doi: 10.1002/aps3.1031. eCollection 2018 Mar.

2.

Differential response of cassava genotypes to infection by cassava mosaic geminiviruses.

Kuria P, Ilyas M, Ateka E, Miano D, Onguso J, Carrington JC, Taylor NJ.

Virus Res. 2017 Jan 2;227:69-81. doi: 10.1016/j.virusres.2016.09.022. Epub 2016 Sep 29.

3.

Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum.

Campo S, Gilbert KB, Carrington JC.

PLoS Pathog. 2016 Jun 2;12(6):e1005640. doi: 10.1371/journal.ppat.1005640. eCollection 2016 Jun.

4.

Fast-forward generation of effective artificial small RNAs for enhanced antiviral defense in plants.

Carbonell A, Carrington JC, Daròs JA.

RNA Dis. 2016;3(1). pii: e1130. Epub 2016 Jan 12.

5.

Loss of CMD2-mediated resistance to cassava mosaic disease in plants regenerated through somatic embryogenesis.

Beyene G, Chauhan RD, Wagaba H, Moll T, Alicai T, Miano D, Carrington JC, Taylor NJ.

Mol Plant Pathol. 2016 Sep;17(7):1095-110. doi: 10.1111/mpp.12353. Epub 2016 Apr 5.

6.

Preparation of Multiplexed Small RNA Libraries From Plants.

Gilbert KB, Fahlgren N, Kasschau KD, Chapman EJ, Carrington JC, Carbonell A.

Bio Protoc. 2014 Nov 5;4(21). pii: e1275.

7.

CG gene body DNA methylation changes and evolution of duplicated genes in cassava.

Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13729-34. doi: 10.1073/pnas.1519067112. Epub 2015 Oct 19.

8.

P-SAMS: a web site for plant artificial microRNA and synthetic trans-acting small interfering RNA design.

Fahlgren N, Hill ST, Carrington JC, Carbonell A.

Bioinformatics. 2016 Jan 1;32(1):157-8. doi: 10.1093/bioinformatics/btv534. Epub 2015 Sep 17.

9.

Antiviral roles of plant ARGONAUTES.

Carbonell A, Carrington JC.

Curr Opin Plant Biol. 2015 Oct;27:111-7. doi: 10.1016/j.pbi.2015.06.013. Epub 2015 Jul 17. Review.

10.

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria.

Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, Hill ST, McEntee CJ, Warnasooriya SN, Kumar I, Ficor T, Turnipseed S, Gilbert KB, Brutnell TP, Carrington JC, Mockler TC, Baxter I.

Mol Plant. 2015 Oct 5;8(10):1520-35. doi: 10.1016/j.molp.2015.06.005. Epub 2015 Jun 20.

11.

Highly specific gene silencing in a monocot species by artificial microRNAs derived from chimeric miRNA precursors.

Carbonell A, Fahlgren N, Mitchell S, Cox KL Jr, Reilly KC, Mockler TC, Carrington JC.

Plant J. 2015 Jun;82(6):1061-75. doi: 10.1111/tpj.12835. Epub 2015 May 20.

12.

Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection.

Garcia-Ruiz H, Carbonell A, Hoyer JS, Fahlgren N, Gilbert KB, Takeda A, Giampetruzzi A, Garcia Ruiz MT, McGinn MG, Lowery N, Martinez Baladejo MT, Carrington JC.

PLoS Pathog. 2015 Mar 25;11(3):e1004755. doi: 10.1371/journal.ppat.1004755. eCollection 2015 Mar.

13.

Correction. Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip mosaic virus infection.

Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, Brempelis KJ, Carrington JC.

Plant Cell. 2015 Mar;27(3):944-5. doi: 10.1105/tpc.15.00204. Epub 2015 Mar 17. No abstract available.

14.

ARGONAUTE PIWI domain and microRNA duplex structure regulate small RNA sorting in Arabidopsis.

Zhang X, Niu D, Carbonell A, Wang A, Lee A, Tun V, Wang Z, Carrington JC, Chang CE, Jin H.

Nat Commun. 2014 Nov 19;5:5468. doi: 10.1038/ncomms6468.

15.

Specific argonautes selectively bind small RNAs derived from potato spindle tuber viroid and attenuate viroid accumulation in vivo.

Minoia S, Carbonell A, Di Serio F, Gisel A, Carrington JC, Navarro B, Flores R.

J Virol. 2014 Oct;88(20):11933-45. doi: 10.1128/JVI.01404-14. Epub 2014 Aug 6.

16.

New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis.

Carbonell A, Takeda A, Fahlgren N, Johnson SC, Cuperus JT, Carrington JC.

Plant Physiol. 2014 May;165(1):15-29. doi: 10.1104/pp.113.234989. Epub 2014 Mar 19.

17.

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.

Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ.

Genome Biol. 2013 Dec 24;14(12):R145. doi: 10.1186/gb-2013-14-12-r145.

18.

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs.

Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC.

PLoS One. 2013 Oct 21;8(10):e77181. doi: 10.1371/journal.pone.0077181. eCollection 2013.

19.

Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants.

Carbonell A, Fahlgren N, Garcia-Ruiz H, Gilbert KB, Montgomery TA, Nguyen T, Cuperus JT, Carrington JC.

Plant Cell. 2012 Sep;24(9):3613-29. doi: 10.1105/tpc.112.099945. Epub 2012 Sep 28.

20.

The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification.

Zhang C, Montgomery TA, Fischer SE, Garcia SM, Riedel CG, Fahlgren N, Sullivan CM, Carrington JC, Ruvkun G.

Curr Biol. 2012 May 22;22(10):881-90. doi: 10.1016/j.cub.2012.04.011. Epub 2012 Apr 26.

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