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Items: 1 to 20 of 59

1.

Proteome-Wide, Structure-Based Prediction of Protein-protein Interactions / New Molecular Interactions Viewer.

Dong S, Lau V, Song R, Ierullo M, Esteban E, Wu Y, Sivieng T, Nahal-Bose HK, Gaudinier A, Pasha A, Oughtred R, Dolinski K, Tyers M, Brady SM, Grene R, Usadel B, Provart NJ.

Plant Physiol. 2019 Jan 24. pii: pp.01216.2018. doi: 10.1104/pp.18.01216. [Epub ahead of print]

2.

A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops.

Hussey SG, Grima-Pettenati J, Myburg AA, Mizrachi E, Brady SM, Yoshikuni Y, Deutsch S.

ACS Synth Biol. 2019 Feb 15;8(2):463-465. doi: 10.1021/acssynbio.8b00440. Epub 2019 Jan 16.

PMID:
30605615
3.

Transcriptional regulation of nitrogen-associated metabolism and growth.

Gaudinier A, Rodriguez-Medina J, Zhang L, Olson A, Liseron-Monfils C, Bågman AM, Foret J, Abbitt S, Tang M, Li B, Runcie DE, Kliebenstein DJ, Shen B, Frank MJ, Ware D, Brady SM.

Nature. 2018 Nov;563(7730):259-264. doi: 10.1038/s41586-018-0656-3. Epub 2018 Oct 24.

PMID:
30356219
4.

Regulation of Root Angle and Gravitropism.

Toal TW, Ron M, Gibson D, Kajala K, Splitt B, Johnson LS, Miller ND, Slovak R, Gaudinier A, Patel R, de Lucas M, Provart NJ, Spalding EP, Busch W, Kliebenstein DJ, Brady SM.

G3 (Bethesda). 2018 Dec 10;8(12):3841-3855. doi: 10.1534/g3.118.200540.

5.

Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis.

Sakamoto S, Somssich M, Nakata MT, Unda F, Atsuzawa K, Kaneko Y, Wang T, Bågman AM, Gaudinier A, Yoshida K, Brady SM, Mansfield SD, Persson S, Mitsuda N.

Nat Plants. 2018 Oct;4(10):777-783. doi: 10.1038/s41477-018-0260-4. Epub 2018 Oct 1.

PMID:
30287954
6.

Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models.

Scheunemann M, Brady SM, Nikoloski Z.

Sci Rep. 2018 May 21;8(1):7919. doi: 10.1038/s41598-018-26232-8.

7.

A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration.

Ikeuchi M, Shibata M, Rymen B, Iwase A, Bågman AM, Watt L, Coleman D, Favero DS, Takahashi T, Ahnert SE, Brady SM, Sugimoto K.

Plant Cell Physiol. 2018 Apr 1;59(4):765-777. doi: 10.1093/pcp/pcy013. Erratum in: Plant Cell Physiol. 2018 Apr 1;59(4):876.

8.

Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.

Li B, Tang M, Nelson A, Caligagan H, Zhou X, Clark-Wiest C, Ngo R, Brady SM, Kliebenstein DJ.

Plant Cell. 2018 Jan;30(1):178-195. doi: 10.1105/tpc.17.00805. Epub 2018 Jan 9.

9.

Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.

Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West DA, Zumstein K, Woodhouse M, Bubb K, Dorrity MW, Queitsch C, Bailey-Serres J, Sinha N, Brady SM, Deal RB.

Plant Cell. 2018 Jan;30(1):15-36. doi: 10.1105/tpc.17.00581. Epub 2017 Dec 11.

10.

SUPPRESSOR OF GAMMA RESPONSE1 Links DNA Damage Response to Organ Regeneration.

Johnson RA, Conklin PA, Tjahjadi M, Missirian V, Toal T, Brady SM, Britt AB.

Plant Physiol. 2018 Feb;176(2):1665-1675. doi: 10.1104/pp.17.01274. Epub 2017 Dec 8.

11.

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutierrez R, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM.

Plant Physiol. 2017 Dec;175(4):1499-1509. doi: 10.1104/pp.17.01490. No abstract available.

12.

Nuclear Transcriptomes at High Resolution Using Retooled INTACT.

Reynoso MA, Pauluzzi GC, Kajala K, Cabanlit S, Velasco J, Bazin J, Deal R, Sinha NR, Brady SM, Bailey-Serres J.

Plant Physiol. 2018 Jan;176(1):270-281. doi: 10.1104/pp.17.00688. Epub 2017 Sep 27.

13.

Identification of Protein-DNA Interactions Using Enhanced Yeast One-Hybrid Assays and a Semiautomated Approach.

Gaudinier A, Tang M, Bågman AM, Brady SM.

Methods Mol Biol. 2017;1610:187-215. doi: 10.1007/978-1-4939-7003-2_13.

PMID:
28439865
14.

DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor.

Turco GM, Kajala K, Kunde-Ramamoorthy G, Ngan CY, Olson A, Deshphande S, Tolkunov D, Waring B, Stelpflug S, Klein P, Schmutz J, Kaeppler S, Ware D, Wei CL, Etchells JP, Brady SM.

New Phytol. 2017 May;214(3):1213-1229. doi: 10.1111/nph.14448. Epub 2017 Feb 10.

15.

Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.

Sparks EE, Drapek C, Gaudinier A, Li S, Ansariola M, Shen N, Hennacy JH, Zhang J, Turco G, Petricka JJ, Foret J, Hartemink AJ, Gordân R, Megraw M, Brady SM, Benfey PN.

Dev Cell. 2016 Dec 5;39(5):585-596. doi: 10.1016/j.devcel.2016.09.031. Epub 2016 Oct 27.

16.

Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.

de Lucas M, Pu L, Turco G, Gaudinier A, Morao AK, Harashima H, Kim D, Ron M, Sugimoto K, Roudier F, Brady SM.

Plant Cell. 2016 Oct;28(10):2616-2631. Epub 2016 Sep 20.

17.

Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.

Porco S, Larrieu A, Du Y, Gaudinier A, Goh T, Swarup K, Swarup R, Kuempers B, Bishopp A, Lavenus J, Casimiro I, Hill K, Benkova E, Fukaki H, Brady SM, Scheres B, Péret B, Bennett MJ.

Development. 2016 Sep 15;143(18):3340-9. doi: 10.1242/dev.136283. Epub 2016 Aug 30.

18.

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.

Murphy E, Vu LD, Van den Broeck L, Lin Z, Ramakrishna P, van de Cotte B, Gaudinier A, Goh T, Slane D, Beeckman T, Inzé D, Brady SM, Fukaki H, De Smet I.

J Exp Bot. 2016 Aug;67(16):4863-75. doi: 10.1093/jxb/erw281. Epub 2016 Jul 18.

19.

Plant developmental responses to climate change.

Gray SB, Brady SM.

Dev Biol. 2016 Nov 1;419(1):64-77. doi: 10.1016/j.ydbio.2016.07.023. Epub 2016 Aug 9. Review.

20.

Indel Group in Genomes (IGG) Molecular Genetic Markers.

Toal TW, Burkart-Waco D, Howell T, Ron M, Kuppu S, Britt A, Chetelat R, Brady SM.

Plant Physiol. 2016 Sep;172(1):38-61. doi: 10.1104/pp.16.00354. Epub 2016 Jul 19.

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