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Items: 1 to 20 of 45


The Rise and Rise of Nicotiana benthamiana: A Plant for All Reasons.

Bally J, Jung H, Mortimer C, Naim F, Philips JG, Hellens R, Bombarely A, Goodin MM, Waterhouse PM.

Annu Rev Phytopathol. 2018 Aug 25;56:405-426. doi: 10.1146/annurev-phyto-080417-050141.


siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass.

Yan H, Bombarely A, Xu B, Frazier TP, Wang C, Chen P, Chen J, Hasing T, Cui C, Zhang X, Zhao B, Huang L.

Biotechnol Biofuels. 2018 Jul 24;11:208. doi: 10.1186/s13068-018-1202-0. eCollection 2018.


Roses for Darwin.

Bombarely A.

Nat Plants. 2018 Jul;4(7):406-407. doi: 10.1038/s41477-018-0195-9. No abstract available.


The Genomic Architecture of a Rapid Island Radiation: Recombination Rate Variation, Chromosome Structure, and Genome Assembly of the Hawaiian Cricket Laupala.

Blankers T, Oh KP, Bombarely A, Shaw KL.

Genetics. 2018 Aug;209(4):1329-1344. doi: 10.1534/genetics.118.300894. Epub 2018 Jun 6.


SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.

Foerster H, Bombarely A, Battey JND, Sierro N, Ivanov NV, Mueller LA.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay035.


Assessment of Genetic Diversity and Population Structure in Iranian Cannabis Germplasm.

Soorni A, Fatahi R, Haak DC, Salami SA, Bombarely A.

Sci Rep. 2017 Nov 15;7(1):15668. doi: 10.1038/s41598-017-15816-5.


De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus.

Montero-Pau J, Blanca J, Bombarely A, Ziarsolo P, Esteras C, Martí-Gómez C, Ferriol M, Gómez P, Jamilena M, Mueller L, Picó B, Cañizares J.

Plant Biotechnol J. 2018 Jun;16(6):1161-1171. doi: 10.1111/pbi.12860. Epub 2017 Dec 4.


Gene expression atlas of fruit ripening and transcriptome assembly from RNA-seq data in octoploid strawberry (Fragaria × ananassa).

Sánchez-Sevilla JF, Vallarino JG, Osorio S, Bombarely A, Posé D, Merchante C, Botella MA, Amaya I, Valpuesta V.

Sci Rep. 2017 Oct 23;7(1):13737. doi: 10.1038/s41598-017-14239-6.


Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica.

Carlson KD, Fernandez-Pozo N, Bombarely A, Pisupati R, Mueller LA, Madlung A.

BMC Genomics. 2017 Aug 23;18(1):653. doi: 10.1186/s12864-017-4067-x.


Dissecting Tissue-Specific Transcriptomic Responses from Leaf and Roots under Salt Stress in Petunia hybrida Mitchell.

Villarino GH, Hu Q, Scanlon MJ, Mueller L, Bombarely A, Mattson NS.

Genes (Basel). 2017 Aug 3;8(8). pii: E195. doi: 10.3390/genes8080195.


XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.

Zhao C, Lasses T, Bako L, Kong D, Zhao B, Chanda B, Bombarely A, Cruz-Ramírez A, Scheres B, Brunner AM, Beers EP.

New Phytol. 2017 Oct;216(1):76-89. doi: 10.1111/nph.14704. Epub 2017 Jul 25.


A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency.

Edwards KD, Fernandez-Pozo N, Drake-Stowe K, Humphry M, Evans AD, Bombarely A, Allen F, Hurst R, White B, Kernodle SP, Bromley JR, Sanchez-Tamburrino JP, Lewis RS, Mueller LA.

BMC Genomics. 2017 Jun 19;18(1):448. doi: 10.1186/s12864-017-3791-6.


Species boundaries in the Astragalus cusickii complex delimited using molecular phylogenetic techniques.

Zimmers JC, Thomas M, Yang L, Bombarely A, Mancuso MM, Wojciechowski MF, Smith JF.

Mol Phylogenet Evol. 2017 Sep;114:93-110. doi: 10.1016/j.ympev.2017.06.004. Epub 2017 Jun 8.


Transcriptomic Analysis of L. Roots during the Early Infection Process.

Jiménez-Ruiz J, Leyva-Pérez MO, Schilirò E, Barroso JB, Bombarely A, Mueller L, Mercado-Blanco J, Luque F.

Plant Genome. 2017 Mar;10(1). doi: 10.3835/plantgenome2016.07.0060.


ERAMOSA controls lateral branching in snapdragon.

Mizzotti C, Galliani BM, Dreni L, Sommer H, Bombarely A, Masiero S.

Sci Rep. 2017 Feb 1;7:41319. doi: 10.1038/srep41319.


Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data.

Soorni A, Haak D, Zaitlin D, Bombarely A.

BMC Genomics. 2017 Jan 7;18(1):49. doi: 10.1186/s12864-016-3412-9.


Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass.

Frazier TP, Palmer NA, Xie F, Tobias CM, Donze-Reiner TJ, Bombarely A, Childs KL, Shu S, Jenkins JW, Schmutz J, Zhang B, Sarath G, Zhao B.

BMC Genomics. 2016 Nov 8;17(1):892.


Expression-level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors.

Coate JE, Song MJ, Bombarely A, Doyle JJ.

New Phytol. 2016 Dec;212(4):1083-1093. doi: 10.1111/nph.14090. Epub 2016 Jul 15.


Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D'Agostino N, Davies K, Druege U, Dudareva N, Egea-Cortines M, Delledonne M, Fernandez-Pozo N, Franken P, Grandont L, Heslop-Harrison JS, Hintzsche J, Johns M, Koes R, Lv X, Lyons E, Malla D, Martinoia E, Mattson NS, Morel P, Mueller LA, Muhlemann J, Nouri E, Passeri V, Pezzotti M, Qi Q, Reinhardt D, Rich M, Richert-Pöggeler KR, Robbins TP, Schatz MC, Schranz ME, Schuurink RC, Schwarzacher T, Spelt K, Tang H, Urbanus SL, Vandenbussche M, Vijverberg K, Villarino GH, Warner RM, Weiss J, Yue Z, Zethof J, Quattrocchio F, Sims TL, Kuhlemeier C.

Nat Plants. 2016 May 27;2(6):16074. doi: 10.1038/nplants.2016.74.


De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis.

Castro JC, Maddox JD, Cobos M, Requena D, Zimic M, Bombarely A, Imán SA, Cerdeira LA, Medina AE.

BMC Genomics. 2015 Nov 24;16:997. doi: 10.1186/s12864-015-2225-6.

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