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Items: 19

1.

Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.

Darby CA, Fitch JR, Brennan PJ, Kelly BJ, Bir N, Magrini V, Leonard J, Cottrell CE, Gastier-Foster JM, Wilson RK, Mardis ER, White P, Langmead B, Schatz MC.

iScience. 2019 May 29;18:1-10. doi: 10.1016/j.isci.2019.05.037. [Epub ahead of print]

2.

Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma.

Ceccarelli M, Barthel FP, Malta TM, Sabedot TS, Salama SR, Murray BA, Morozova O, Newton Y, Radenbaugh A, Pagnotta SM, Anjum S, Wang J, Manyam G, Zoppoli P, Ling S, Rao AA, Grifford M, Cherniack AD, Zhang H, Poisson L, Carlotti CG Jr, Tirapelli DP, Rao A, Mikkelsen T, Lau CC, Yung WK, Rabadan R, Huse J, Brat DJ, Lehman NL, Barnholtz-Sloan JS, Zheng S, Hess K, Rao G, Meyerson M, Beroukhim R, Cooper L, Akbani R, Wrensch M, Haussler D, Aldape KD, Laird PW, Gutmann DH; TCGA Research Network, Noushmehr H, Iavarone A, Verhaak RG.

Cell. 2016 Jan 28;164(3):550-63. doi: 10.1016/j.cell.2015.12.028.

3.

Genomic Classification of Cutaneous Melanoma.

Cancer Genome Atlas Network.

Cell. 2015 Jun 18;161(7):1681-96. doi: 10.1016/j.cell.2015.05.044.

4.

Analysis of hedgehog signaling in cerebellar granule cell precursors in a conditional Nsdhl allele demonstrates an essential role for cholesterol in postnatal CNS development.

Cunningham D, DeBarber AE, Bir N, Binkley L, Merkens LS, Steiner RD, Herman GE.

Hum Mol Genet. 2015 May 15;24(10):2808-25. doi: 10.1093/hmg/ddv042. Epub 2015 Feb 4.

5.

North Carolina's Farmworker Advocacy Network demands a Harvest of Dignity.

Bir N.

New Solut. 2012;22(2):221-5. doi: 10.2190/NS.22.2.h. No abstract available.

PMID:
22776582
6.

Contactin 4 as an autism susceptibility locus.

Cottrell CE, Bir N, Varga E, Alvarez CE, Bouyain S, Zernzach R, Thrush DL, Evans J, Trimarchi M, Butter EM, Cunningham D, Gastier-Foster JM, McBride KL, Herman GE.

Autism Res. 2011 Jun;4(3):189-99. doi: 10.1002/aur.184. Epub 2011 Feb 9.

7.

Cytoprotective-selective activated protein C attenuates Pseudomonas aeruginosa-induced lung injury in mice.

Bir N, Lafargue M, Howard M, Goolaerts A, Roux J, Carles M, Cohen MJ, Iles KE, Fernández JA, Griffin JH, Pittet JF.

Am J Respir Cell Mol Biol. 2011 Sep;45(3):632-41. doi: 10.1165/rcmb.2010-0397OC. Epub 2011 Jan 21.

8.

Women rule.

Bullard MK, Bir N, Kwan R, Cureton E, Knudson P, Harken A.

Surgery. 2010 Jan;147(1):134-7. doi: 10.1016/j.surg.2009.04.033.

PMID:
20082798
9.

Protein C depletion early after trauma increases the risk of ventilator-associated pneumonia.

Cohen MJ, Bir N, Rahn P, Dotson R, Brohi K, Chesebro BB, Mackersie R, Carles M, Wiener-Kronish J, Pittet JF.

J Trauma. 2009 Dec;67(6):1176-81. doi: 10.1097/TA.0b013e3181c1c1bc.

PMID:
20009664
10.

Significant contributions of the extraembryonic membranes and maternal genotype to the placental pathology in heterozygous Nsdhl deficient female embryos.

Cunningham D, Talabere T, Bir N, Kennedy M, McBride KL, Herman GE.

Hum Mol Genet. 2010 Jan 15;19(2):364-73. doi: 10.1093/hmg/ddp502. Epub 2009 Oct 30.

11.

Fondaparinux for prevention of venous thromboembolism in high-risk trauma patients: a pilot study.

Lu JP, Knudson MM, Bir N, Kallet R, Atkinson K.

J Am Coll Surg. 2009 Nov;209(5):589-94. doi: 10.1016/j.jamcollsurg.2009.08.001. Epub 2009 Sep 11.

PMID:
19854398
12.

Angiopoietin-2, marker and mediator of endothelial activation with prognostic significance early after trauma?

Ganter MT, Cohen MJ, Brohi K, Chesebro BB, Staudenmayer KL, Rahn P, Christiaans SC, Bir ND, Pittet JF.

Ann Surg. 2008 Feb;247(2):320-6. doi: 10.1097/SLA.0b013e318162d616.

13.

Immunogenicity of Duffy binding-like domains that bind chondroitin sulfate A and protection against pregnancy-associated malaria.

Bir N, Yazdani SS, Avril M, Layez C, Gysin J, Chitnis CE.

Infect Immun. 2006 Oct;74(10):5955-63.

14.

Receptor-binding residues lie in central regions of Duffy-binding-like domains involved in red cell invasion and cytoadherence by malaria parasites.

Mayor A, Bir N, Sawhney R, Singh S, Pattnaik P, Singh SK, Sharma A, Chitnis CE.

Blood. 2005 Mar 15;105(6):2557-63. Epub 2004 Sep 2.

15.

Crystal structure of the YajQ protein from Haemophilus influenzae reveals a tandem of RNP-like domains.

Teplyakov A, Obmolova G, Bir N, Reddy P, Howard AJ, Gilliland GL.

J Struct Funct Genomics. 2003;4(1):1-9.

PMID:
12943362
16.

Biochemical characterization of an immunodominant allergen/antigen ofAspergillus fumigatus.

Bir N, Paliwal A, Muralidhar K, Sarma PU.

Indian J Clin Biochem. 1999 Jul;14(2):149-58. doi: 10.1007/BF02867913.

17.

Detection ofAspergillus Fumigatus based on Asp fl gene in clinical specimens.

Paliwal A, Bir N, Raghuraman S, Reddy TL, Sarma PU.

Indian J Clin Biochem. 1999 Jul;14(2):129-34. doi: 10.1007/BF02867910.

18.

Immuno-polymerase chain reaction for detection ofAspergillus fumigatus.

Sarma PU, Bir N, Paliwal A, Reddy P.

Indian J Clin Biochem. 1997 Dec;12(Suppl 1):101-6. doi: 10.1007/BF02873075.

19.

A rapid method for the isolation of genomic DNA from Aspergillus fumigatus.

Bir N, Paliwal A, Muralidhar K, Reddy P, Sarma PU.

Prep Biochem. 1995 Nov;25(4):171-81.

PMID:
8570567

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