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Items: 1 to 20 of 61

1.

The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury.

Späth MR, Bartram MP, Palacio-Escat N, Hoyer KJR, Debes C, Demir F, Schroeter CB, Mandel AM, Grundmann F, Ciarimboli G, Beyer A, Kizhakkedathu JN, Brodesser S, Göbel H, Becker JU, Benzing T, Schermer B, Höhne M, Burst V, Saez-Rodriguez J, Huesgen PF, Müller RU, Rinschen MM.

Kidney Int. 2018 Nov 29. pii: S0085-2538(18)30644-6. doi: 10.1016/j.kint.2018.08.037. [Epub ahead of print]

PMID:
30522767
2.

Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity.

Hahn O, Stubbs TM, Reik W, Grönke S, Beyer A, Partridge L.

PLoS Genet. 2018 Nov 21;14(11):e1007766. doi: 10.1371/journal.pgen.1007766. eCollection 2018 Nov.

3.

Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers.

Guo T, Li L, Zhong Q, Rupp NJ, Charmpi K, Wong CE, Wagner U, Rueschoff JH, Jochum W, Fankhauser CD, Saba K, Poyet C, Wild PJ, Aebersold R, Beyer A.

Life Sci Alliance. 2018 May 29;1(2). pii: e201800042. doi: 10.26508/lsa.201800042.

4.

Single-nephron proteomes connect morphology and function in proteinuric kidney disease.

Höhne M, Frese CK, Grahammer F, Dafinger C, Ciarimboli G, Butt L, Binz J, Hackl MJ, Rahmatollahi M, Kann M, Schneider S, Altintas MM, Schermer B, Reinheckel T, Göbel H, Reiser J, Huber TB, Kramann R, Seeger-Nukpezah T, Liebau MC, Beck BB, Benzing T, Beyer A, Rinschen MM.

Kidney Int. 2018 Jun;93(6):1308-1319. doi: 10.1016/j.kint.2017.12.012. Epub 2018 Mar 9.

PMID:
29530281
5.

Landscape of nuclear transport receptor cargo specificity.

Mackmull MT, Klaus B, Heinze I, Chokkalingam M, Beyer A, Russell RB, Ori A, Beck M.

Mol Syst Biol. 2017 Dec 18;13(12):962. doi: 10.15252/msb.20177608.

6.

Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.

Liu Y, Borel C, Li L, Müller T, Williams EG, Germain PL, Buljan M, Sajic T, Boersema PJ, Shao W, Faini M, Testa G, Beyer A, Antonarakis SE, Aebersold R.

Nat Commun. 2017 Oct 31;8(1):1212. doi: 10.1038/s41467-017-01422-6.

7.

regNet: An R package for network-based propagation of gene expression alterations.

Seifert M, Beyer A.

Bioinformatics. 2017 Aug 31. doi: 10.1093/bioinformatics/btx544. [Epub ahead of print]

PMID:
28968690
8.

A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.

Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L.

Mol Syst Biol. 2017 Sep 15;13(9):939. doi: 10.15252/msb.20177663.

9.

Detection of COPB2 as a KRAS synthetic lethal partner through integration of functional genomics screens.

Christodoulou EG, Yang H, Lademann F, Pilarsky C, Beyer A, Schroeder M.

Oncotarget. 2017 May 23;8(21):34283-34297. doi: 10.18632/oncotarget.16079.

10.

Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism.

Hahn O, Grönke S, Stubbs TM, Ficz G, Hendrich O, Krueger F, Andrews S, Zhang Q, Wakelam MJ, Beyer A, Reik W, Partridge L.

Genome Biol. 2017 Mar 28;18(1):56. doi: 10.1186/s13059-017-1187-1.

11.
12.

The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus.

He F, Arce AL, Schmitz G, Koornneef M, Novikova P, Beyer A, de Meaux J.

Mol Biol Evol. 2016 Aug;33(8):2088-101. doi: 10.1093/molbev/msw096. Epub 2016 May 11.

PMID:
27189540
13.

On the Dependency of Cellular Protein Levels on mRNA Abundance.

Liu Y, Beyer A, Aebersold R.

Cell. 2016 Apr 21;165(3):535-50. doi: 10.1016/j.cell.2016.03.014. Review.

14.

The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan.

Valenzano DR, Benayoun BA, Singh PP, Zhang E, Etter PD, Hu CK, Clément-Ziza M, Willemsen D, Cui R, Harel I, Machado BE, Yee MC, Sharp SC, Bustamante CD, Beyer A, Johnson EA, Brunet A.

Cell. 2015 Dec 3;163(6):1539-54. doi: 10.1016/j.cell.2015.11.008.

15.

Testing and Validation of Computational Methods for Mass Spectrometry.

Gatto L, Hansen KD, Hoopmann MR, Hermjakob H, Kohlbacher O, Beyer A.

J Proteome Res. 2016 Mar 4;15(3):809-14. doi: 10.1021/acs.jproteome.5b00852. Epub 2015 Nov 17.

16.

A random forest approach to capture genetic effects in the presence of population structure.

Stephan J, Stegle O, Beyer A.

Nat Commun. 2015 Jun 25;6:7432. doi: 10.1038/ncomms8432.

PMID:
26109276
17.

Associations between DNA methylation and schizophrenia-related intermediate phenotypes - a gene set enrichment analysis.

Hass J, Walton E, Wright C, Beyer A, Scholz M, Turner J, Liu J, Smolka MN, Roessner V, Sponheim SR, Gollub RL, Calhoun VD, Ehrlich S.

Prog Neuropsychopharmacol Biol Psychiatry. 2015 Jun 3;59:31-39. doi: 10.1016/j.pnpbp.2015.01.006. Epub 2015 Jan 15.

18.

Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.

Clément-Ziza M, Marsellach FX, Codlin S, Papadakis MA, Reinhardt S, Rodríguez-López M, Martin S, Marguerat S, Schmidt A, Lee E, Workman CT, Bähler J, Beyer A.

Mol Syst Biol. 2014 Nov 28;10:764. doi: 10.15252/msb.20145123.

19.

Stage-specific binding profiles of cohesin in resting and activated B lymphocytes suggest a role for cohesin in immunoglobulin class switching and maturation.

Günal-Sadık G, Paszkowski-Rogacz M, Singaravelu K, Beyer A, Buchholz F, Jessberger R.

PLoS One. 2014 Nov 6;9(11):e111748. doi: 10.1371/journal.pone.0111748. eCollection 2014.

20.

Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure.

Kalkhof S, Dautel F, Loguercio S, Baumann S, Trump S, Jungnickel H, Otto W, Rudzok S, Potratz S, Luch A, Lehmann I, Beyer A, von Bergen M.

J Proteome Res. 2015 Jan 2;14(1):164-82. doi: 10.1021/pr500957t. Epub 2014 Nov 17.

PMID:
25362887

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