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Items: 15

1.

Can all heritable biology really be reduced to a single dimension?

Babbitt GA, Coppola EE, Alawad MA, Hudson AO.

Gene. 2016 Mar 10;578(2):162-8. doi: 10.1016/j.gene.2015.12.043. Epub 2015 Dec 23. Review.

2.

TRX-LOGOS - a graphical tool to demonstrate DNA information content dependent upon backbone dynamics in addition to base sequence.

Fortin CH, Schulze KV, Babbitt GA.

Source Code Biol Med. 2015 Sep 25;10:10. doi: 10.1186/s13029-015-0040-8. eCollection 2015.

3.

Synonymous codon bias and functional constraint on GC3-related DNA backbone dynamics in the prokaryotic nucleoid.

Babbitt GA, Alawad MA, Schulze KV, Hudson AO.

Nucleic Acids Res. 2014;42(17):10915-26. doi: 10.1093/nar/gku811. Epub 2014 Sep 8.

4.

Observing Fluorescent Probes in Living Cells using a Low-Cost LED Flashlight Retrofitted to a Common Vintage Light Microscope.

Babbitt GA, Hanzlik CA, Busse KN.

J Microbiol Biol Educ. 2013 May 6;14(1):121-4. doi: 10.1128/jmbe.v14i1.530. Print 2013. No abstract available.

5.

Codons support the maintenance of intrinsic DNA polymer flexibility over evolutionary timescales.

Babbitt GA, Schulze KV.

Genome Biol Evol. 2012;4(9):954-65. doi: 10.1093/gbe/evs073. Epub 2012 Aug 30.

6.

Functional conservation of nucleosome formation selectively biases presumably neutral molecular variation in yeast genomes.

Babbitt GA, Cotter CR.

Genome Biol Evol. 2011;3:15-22. doi: 10.1093/gbe/evq081. Epub 2010 Dec 6.

7.

Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts.

Babbitt GA.

Gene. 2010 Oct 15;466(1-2):43-8. doi: 10.1016/j.gene.2010.07.002. Epub 2010 Jul 15.

PMID:
20637845
8.

The molecular evolution of nucleosome positioning through sequence-dependent deformation of the DNA polymer.

Babbitt GA, Tolstorukov MY, Kim Y.

J Biomol Struct Dyn. 2010 Jun;27(6):765-80.

PMID:
20232932
9.

The enrichment of TATA box and the scarcity of depleted proximal nucleosome in the promoters of duplicated yeast genes.

Kim Y, Lee JH, Babbitt GA.

J Mol Evol. 2010 Jan;70(1):69-73. doi: 10.1007/s00239-009-9309-3. Epub 2009 Dec 16.

PMID:
20013336
10.
11.

Phenology of body mass changes during reproduction in a nomadic, tropical waterbird, the Scarlet Ibis (Eudocimus ruber).

Babbitt GA, Frederick PC.

Zoo Biol. 2008 Sep;27(5):360-70. doi: 10.1002/zoo.20198.

PMID:
19360630
12.

Inferring natural selection on fine-scale chromatin organization in yeast.

Babbitt GA, Kim Y.

Mol Biol Evol. 2008 Aug;25(8):1714-27. doi: 10.1093/molbev/msn127. Epub 2008 May 29.

PMID:
18515262
13.

How accurate is the phenotype? - an analysis of developmental noise in a cotton aphid clone.

Babbitt GA.

BMC Dev Biol. 2008 Feb 23;8:19. doi: 10.1186/1471-213X-8-19.

15.

Are fluctuating asymmetry studies adequately sampled? Implications of a new model for size distribution.

Babbitt GA, Kiltie R, Bolker B.

Am Nat. 2006 Feb;167(2):230-45. Epub 2005 Dec 19.

PMID:
16670983

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