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Items: 1 to 20 of 22

1.

Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination.

Kamieniarz-Gdula K, Gdula MR, Panser K, Nojima T, Monks J, Wiśniewski JR, Riepsaame J, Brockdorff N, Pauli A, Proudfoot NJ.

Mol Cell. 2019 Apr 4;74(1):158-172.e9. doi: 10.1016/j.molcel.2019.01.027. Epub 2019 Feb 25.

2.

The Ly6/uPAR protein Bouncer is necessary and sufficient for species-specific fertilization.

Herberg S, Gert KR, Schleiffer A, Pauli A.

Science. 2018 Sep 7;361(6406):1029-1033. doi: 10.1126/science.aat7113.

3.

Nodal patterning without Lefty inhibitory feedback is functional but fragile.

Rogers KW, Lord ND, Gagnon JA, Pauli A, Zimmerman S, Aksel DC, Reyon D, Tsai SQ, Joung JK, Schier AF.

Elife. 2017 Dec 7;6. pii: e28785. doi: 10.7554/eLife.28785.

4.

Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling.

Norris ML, Pauli A, Gagnon JA, Lord ND, Rogers KW, Mosimann C, Zon LI, Schier AF.

Elife. 2017 Nov 9;6. pii: e22626. doi: 10.7554/eLife.22626.

5.

Loss of Apela Peptide in Mice Causes Low Penetrance Embryonic Lethality and Defects in Early Mesodermal Derivatives.

Freyer L, Hsu CW, Nowotschin S, Pauli A, Ishida J, Kuba K, Fukamizu A, Schier AF, Hoodless PA, Dickinson ME, Hadjantonakis AK.

Cell Rep. 2017 Aug 29;20(9):2116-2130. doi: 10.1016/j.celrep.2017.08.014.

6.

Decoding sORF translation - from small proteins to gene regulation.

Cabrera-Quio LE, Herberg S, Pauli A.

RNA Biol. 2016 Nov;13(11):1051-1059. Epub 2016 Aug 12. Review.

7.

Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish.

Chew GL, Pauli A, Schier AF.

Nat Commun. 2016 May 24;7:11663. doi: 10.1038/ncomms11663.

8.

Antisense Oligonucleotide-Mediated Transcript Knockdown in Zebrafish.

Pauli A, Montague TG, Lennox KA, Behlke MA, Schier AF.

PLoS One. 2015 Oct 5;10(10):e0139504. doi: 10.1371/journal.pone.0139504. eCollection 2015.

9.

High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies.

Rabani M, Raychowdhury R, Jovanovic M, Rooney M, Stumpo DJ, Pauli A, Hacohen N, Schier AF, Blackshear PJ, Friedman N, Amit I, Regev A.

Cell. 2014 Dec 18;159(7):1698-710. doi: 10.1016/j.cell.2014.11.015. Epub 2014 Dec 11.

10.

Identifying (non-)coding RNAs and small peptides: challenges and opportunities.

Pauli A, Valen E, Schier AF.

Bioessays. 2015 Jan;37(1):103-12. doi: 10.1002/bies.201400103. Epub 2014 Oct 24. Review.

11.

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.

Gagnon JA, Valen E, Thyme SB, Huang P, Akhmetova L, Pauli A, Montague TG, Zimmerman S, Richter C, Schier AF.

PLoS One. 2014 May 29;9(5):e98186. doi: 10.1371/journal.pone.0098186. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106396. Ahkmetova, Laila [corrected to Akhmetova, Laila].

12.

Toddler: an embryonic signal that promotes cell movement via Apelin receptors.

Pauli A, Norris ML, Valen E, Chew GL, Gagnon JA, Zimmerman S, Mitchell A, Ma J, Dubrulle J, Reyon D, Tsai SQ, Joung JK, Saghatelian A, Schier AF.

Science. 2014 Feb 14;343(6172):1248636. doi: 10.1126/science.1248636. Epub 2014 Jan 9.

13.

Canonical nucleosome organization at promoters forms during genome activation.

Zhang Y, Vastenhouw NL, Feng J, Fu K, Wang C, Ge Y, Pauli A, van Hummelen P, Schier AF, Liu XS.

Genome Res. 2014 Feb;24(2):260-6. doi: 10.1101/gr.157750.113. Epub 2013 Nov 27.

14.

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.

Chew GL, Pauli A, Rinn JL, Regev A, Schier AF, Valen E.

Development. 2013 Jul;140(13):2828-34. doi: 10.1242/dev.098343. Epub 2013 May 22.

15.

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF.

Genome Res. 2012 Mar;22(3):577-91. doi: 10.1101/gr.133009.111. Epub 2011 Nov 22.

16.

Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners.

Strübbe G, Popp C, Schmidt A, Pauli A, Ringrose L, Beisel C, Paro R.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5572-7. doi: 10.1073/pnas.1007916108. Epub 2011 Mar 17.

17.

Non-coding RNAs as regulators of embryogenesis.

Pauli A, Rinn JL, Schier AF.

Nat Rev Genet. 2011 Feb;12(2):136-49. doi: 10.1038/nrg2904. Review.

18.

A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands.

Pauli A, van Bemmel JG, Oliveira RA, Itoh T, Shirahige K, van Steensel B, Nasmyth K.

Curr Biol. 2010 Oct 26;20(20):1787-98. doi: 10.1016/j.cub.2010.09.006. Epub 2010 Oct 7.

19.

Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei.

Oliveira RA, Hamilton RS, Pauli A, Davis I, Nasmyth K.

Nat Cell Biol. 2010 Feb;12(2):185-92. doi: 10.1038/ncb2018. Epub 2010 Jan 17.

20.

Cell-type-specific TEV protease cleavage reveals cohesin functions in Drosophila neurons.

Pauli A, Althoff F, Oliveira RA, Heidmann S, Schuldiner O, Lehner CF, Dickson BJ, Nasmyth K.

Dev Cell. 2008 Feb;14(2):239-51. doi: 10.1016/j.devcel.2007.12.009.

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