A B12-dependent radical SAM enzyme involved in oxetanocin A biosynthesis

Nature. 2017 Apr 20;544(7650):322-326. doi: 10.1038/nature21689. Epub 2017 Mar 27.

Abstract

Oxetanocin A (OXT-A) is a potent antitumour, antiviral and antibacterial compound. Biosynthesis of OXT-A has been linked to a plasmid-borne Bacillus megaterium gene cluster that contains four genes: oxsA, oxsB, oxrA and oxrB. Here we show that both the oxsA and oxsB genes are required for the production of OXT-A. Biochemical analysis of the encoded proteins, a cobalamin (Cbl)-dependent S-adenosylmethionine (AdoMet) radical enzyme, OxsB, and an HD-domain phosphohydrolase, OxsA, reveals that OXT-A is derived from a 2'-deoxyadenosine phosphate in an OxsB-catalysed ring contraction reaction initiated by hydrogen atom abstraction from C2'. Hence, OxsB represents the first biochemically characterized non-methylating Cbl-dependent AdoMet radical enzyme. X-ray analysis of OxsB reveals the fold of a Cbl-dependent AdoMet radical enzyme, a family of enzymes with an estimated 7,000 members. Overall, this work provides a framework for understanding the interplay of AdoMet and Cbl cofactors and expands the catalytic repertoire of Cbl-dependent AdoMet radical enzymes.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adenine / analogs & derivatives*
  • Adenine / biosynthesis
  • Adenosine Monophosphate / metabolism
  • Bacillus megaterium / enzymology*
  • Bacillus megaterium / genetics
  • Bacillus megaterium / metabolism
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Biocatalysis*
  • Coenzymes / metabolism*
  • Crystallography, X-Ray
  • Deoxyadenine Nucleotides / metabolism
  • Genes, Bacterial / genetics
  • Models, Molecular
  • Multigene Family / genetics
  • Protein Conformation
  • S-Adenosylmethionine / metabolism*
  • Vitamin B 12 / metabolism*

Substances

  • Bacterial Proteins
  • Coenzymes
  • Deoxyadenine Nucleotides
  • oxetanocin
  • Adenosine Monophosphate
  • S-Adenosylmethionine
  • Adenine
  • Vitamin B 12