Format

Send to

Choose Destination
Plant J. 2018 Oct 29. doi: 10.1111/tpj.14140. [Epub ahead of print]

Co-expression analysis aids in the identification of genes in the cuticular wax pathway in maize.

Author information

1
Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
2
Department of Plant Pathology, Kansas State University, Manhattan, KS, 66506, USA.
3
College of Agronomy, Jilin Agricultural University, Changchun, Jilin, 130118, China.
4
Institute of Molecular Breeding for Maize, Qilu Normal University, Jinan, 250200, China.
5
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
6
Department of Agronomy, Iowa State University, Ames, IA, 50011-3605, USA.
7
USDA/ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
8
Division of Biostatistics and Computational Biology, College of Dentistry, University of Iowa, Iowa City, IA, 52242, USA.
9
Department of Biostatistics, University of Iowa, Iowa City, IA, 52242, USA.
10
Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.
11
School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI, 49931, USA.

Abstract

Epicuticular waxes provide a hydrophobic barrier that protects land plants from environmental stresses. To elucidate the molecular functions of maize glossy mutants that reduce the accumulation of epicuticular waxes, eight non-allelic glossy mutants were subjected to transcriptomic comparisons with their respective wild-type siblings. Transcriptomic comparisons identified 2279 differentially expressed (DE) genes. Other glossy genes tended to be down-regulated in glossy mutants; by contrast stress-responsive pathways were induced in mutants. Gene co-expression network (GCN) analysis found that glossy genes were clustered, suggestive of co-regulation. Genes that potentially regulate the accumulation of glossy gene transcripts were identified via a pathway level co-expression analysis. Expression data from diverse organs showed that maize glossy genes are generally active in young leaves, silks, and tassels, while largely inactive in seeds and roots. Through reverse genetics, a DE gene homologous to Arabidopsis CER8 and co-expressed with known glossy genes was confirmed to participate in epicuticular wax accumulation. GCN data-informed forward genetics approach enabled cloning of the gl14 gene, which encodes a putative membrane-associated protein. Our results deepen understanding of the transcriptional regulation of the genes involved in the accumulation of epicuticular wax, and provide two maize glossy genes and a number of candidate genes for further characterization.

KEYWORDS:

Zea mays ; cloning; co-expression network; cuticular wax; glossy

PMID:
30375131
DOI:
10.1111/tpj.14140

Supplemental Content

Full text links

Icon for Wiley
Loading ...
Support Center