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Biophys J. 2018 Jan 9;114(1):40-52. doi: 10.1016/j.bpj.2017.10.034.

Decrypting the Heat Activation Mechanism of TRPV1 Channel by Molecular Dynamics Simulation.

Author information

1
Department of Physics, State University of New York at Buffalo, Buffalo, New York.
2
Department of Physics, State University of New York at Buffalo, Buffalo, New York. Electronic address: wjzheng@buffalo.edu.

Abstract

As a prototype cellular sensor, the TRPV1 cation channel undergoes a closed-to-open gating transition in response to various physical and chemical stimuli including noxious heat. Despite recent progress, the molecular mechanism of heat activation of TRPV1 gating remains enigmatic. Toward decrypting the structural basis of TRPV1 heat activation, we performed extensive molecular dynamics simulations (with cumulative simulation time of ∼11 μs) for the wild-type channel and a constitutively active double mutant at different temperatures (30, 60, and 72°C), starting from a high-resolution closed-channel structure of TRPV1 solved by cryo-electron microscopy. In the wild-type simulations, we observed heat-activated conformational changes (e.g., expansion or contraction) in various key domains of TRPV1 (e.g., the S2-S3 and S4-S5 linkers) to prime the channel for gating. These conformational changes involve a number of dynamic hydrogen-bond interactions that were validated with previous mutational studies. Next, our mutant simulations observed channel opening after a series of conformational changes that propagate from the channel periphery to the channel pore via key intermediate domains (including the S2-S3 and S4-S5 linkers). The gating transition is accompanied by a large increase in the protein-water electrostatic interaction energy, which supports the contribution of desolvation of polar/charged residues to the temperature-sensitive TRPV1 gating. Taken together, our molecular dynamics simulations and analyses offered, to our knowledge, new structural, dynamic, and energetic information to guide future mutagenesis and functional studies of the TRPV1 channels and development of TRPV1-targeting drugs.

PMID:
29320695
PMCID:
PMC5773748
DOI:
10.1016/j.bpj.2017.10.034
[Indexed for MEDLINE]
Free PMC Article

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