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Items: 1 to 20 of 22

1.

Evaluating measures of association for single-cell transcriptomics.

Skinnider MA, Squair JW, Foster LJ.

Nat Methods. 2019 May;16(5):381-386. doi: 10.1038/s41592-019-0372-4. Epub 2019 Apr 8.

PMID:
30962620
2.

Context-specific interactions in literature-curated protein interaction databases.

Stacey RG, Skinnider MA, Chik JHL, Foster LJ.

BMC Genomics. 2018 Oct 19;19(1):758. doi: 10.1186/s12864-018-5139-2.

3.

Genomic data integration systematically biases interactome mapping.

Skinnider MA, Stacey RG, Foster LJ.

PLoS Comput Biol. 2018 Oct 17;14(10):e1006474. doi: 10.1371/journal.pcbi.1006474. eCollection 2018 Oct.

4.

Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury.

Squair JW, Tigchelaar S, Moon KM, Liu J, Tetzlaff W, Kwon BK, Krassioukov AV, West CR, Foster LJ, Skinnider MA.

Elife. 2018 Oct 2;7. pii: e39188. doi: 10.7554/eLife.39188.

5.

Predictors of sustained research involvement among MD/PhD programme graduates.

Skinnider MA, Twa DDW, Squair JW, Rosenblum ND, Lukac CD; Canadian MD/PhD Program Investigation Group.

Med Educ. 2018 May;52(5):536-545. doi: 10.1111/medu.13513. Epub 2018 Mar 13.

PMID:
29532953
6.

Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis.

Skinnider MA, Johnston CW, Merwin NJ, Dejong CA, Magarvey NA.

BMC Genomics. 2018 Jan 15;19(1):45. doi: 10.1186/s12864-018-4435-1.

7.

Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm.

Skinnider MA, Dejong CA, Franczak BC, McNicholas PD, Magarvey NA.

J Cheminform. 2017 Aug 16;9(1):46. doi: 10.1186/s13321-017-0234-y.

8.

A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE).

Stacey RG, Skinnider MA, Scott NE, Foster LJ.

BMC Bioinformatics. 2017 Oct 23;18(1):457. doi: 10.1186/s12859-017-1865-8.

9.

Cross-sectional-derived determinants of satisfaction with physician-scientist training among Canadian MD/PhD graduates.

Twa DDW, Skinnider MA, Squair JW, Lukac CD; Canadian MD/PhD Program Investigation Group.

PLoS One. 2017 Sep 28;12(9):e0185218. doi: 10.1371/journal.pone.0185218. eCollection 2017.

10.

Statistical reanalysis of natural products reveals increasing chemical diversity.

Skinnider MA, Magarvey NA.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):E6271-E6272. doi: 10.1073/pnas.1708560114. Epub 2017 Jul 14. No abstract available.

11.

PRISM 3: expanded prediction of natural product chemical structures from microbial genomes.

Skinnider MA, Merwin NJ, Johnston CW, Magarvey NA.

Nucleic Acids Res. 2017 Jul 3;45(W1):W49-W54. doi: 10.1093/nar/gkx320.

12.

Characteristics and outcomes of Canadian MD/PhD program graduates: a cross-sectional survey.

Skinnider MA, Squair JW, Twa DDW, Ji JX, Kuzyk A, Wang X, Steadman PE, Zaslavsky K, Dey AK, Eisenberg MJ, Gagné ÈR, HayGlass KT, Lewis JF, Margetts PJ, Underhill DA, Rosenblum ND, Raymond LA.

CMAJ Open. 2017 Apr 25;5(2):E308-E314. doi: 10.9778/cmajo.20160152.

13.

A Targeted Proteomics Analysis of Cerebrospinal Fluid after Acute Human Spinal Cord Injury.

Streijger F, Skinnider MA, Rogalski JC, Balshaw R, Shannon CP, Prudova A, Belanger L, Ritchie L, Tsang A, Christie S, Parent S, Mac-Thiong JM, Bailey C, Urquhart J, Ailon T, Paquette S, Boyd M, Street J, Fisher CG, Dvorak MF, Borchers CH, Foster LJ, Kwon BK.

J Neurotrauma. 2017 Jun 15;34(12):2054-2068. doi: 10.1089/neu.2016.4879. Epub 2017 Apr 7.

PMID:
28276985
14.

Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining.

Skinnider MA, Johnston CW, Edgar RE, Dejong CA, Merwin NJ, Rees PN, Magarvey NA.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6343-E6351. Epub 2016 Oct 3.

15.

Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching.

Dejong CA, Chen GM, Li H, Johnston CW, Edwards MR, Rees PN, Skinnider MA, Webster AL, Magarvey NA.

Nat Chem Biol. 2016 Dec;12(12):1007-1014. doi: 10.1038/nchembio.2188. Epub 2016 Oct 3.

PMID:
27694801
16.

Assembly and clustering of natural antibiotics guides target identification.

Johnston CW, Skinnider MA, Dejong CA, Rees PN, Chen GM, Walker CG, French S, Brown ED, Bérdy J, Liu DY, Magarvey NA.

Nat Chem Biol. 2016 Apr;12(4):233-9. doi: 10.1038/nchembio.2018. Epub 2016 Feb 1.

PMID:
26829473
17.

The Canadian clinician-scientist training program must be reinstated.

Twa DD, Squair JW, Skinnider MA, Ji JX.

J Clin Invest. 2015 Nov 3;125(12):4317-9. doi: 10.1172/JCI85194. Review.

18.

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM).

Skinnider MA, Dejong CA, Rees PN, Johnston CW, Li H, Webster AL, Wyatt MA, Magarvey NA.

Nucleic Acids Res. 2015 Nov 16;43(20):9645-62. doi: 10.1093/nar/gkv1012. Epub 2015 Oct 5.

19.

An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products.

Johnston CW, Skinnider MA, Wyatt MA, Li X, Ranieri MR, Yang L, Zechel DL, Ma B, Magarvey NA.

Nat Commun. 2015 Sep 28;6:8421. doi: 10.1038/ncomms9421.

20.

Exploration of Nonribosomal Peptide Families with an Automated Informatic Search Algorithm.

Yang L, Ibrahim A, Johnston CW, Skinnider MA, Ma B, Magarvey NA.

Chem Biol. 2015 Sep 17;22(9):1259-69. doi: 10.1016/j.chembiol.2015.08.008. Epub 2015 Sep 10.

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