Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 142

1.

Zika virus infection induces DNA damage response in human neural progenitors that enhances viral replication.

Hammack C, Ogden SC, Madden JC Jr, Medina A, Xu C, Phillips E, Son Y, Cone A, Giovinazzi S, Didier RA, Gilbert DM, Song H, Ming G, Wen Z, Brinton MA, Gunjan A, Tang H.

J Virol. 2019 Aug 2. pii: JVI.00638-19. doi: 10.1128/JVI.00638-19. [Epub ahead of print]

PMID:
31375586
2.

Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment.

Dileep V, Wilson KA, Marchal C, Lyu X, Zhao PA, Li B, Poulet A, Bartlett DA, Rivera-Mulia JC, Qin ZS, Robins AJ, Schulz TC, Kulik MJ, McCord RP, Dekker J, Dalton S, Corces VG, Gilbert DM.

Stem Cell Reports. 2019 Jul 9;13(1):193-206. doi: 10.1016/j.stemcr.2019.05.021. Epub 2019 Jun 20.

3.

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.

Sima J, Chakraborty A, Dileep V, Michalski M, Klein KN, Holcomb NP, Turner JL, Paulsen MT, Rivera-Mulia JC, Trevilla-Garcia C, Bartlett DA, Zhao PA, Washburn BK, Nora EP, Kraft K, Mundlos S, Bruneau BG, Ljungman M, Fraser P, Ay F, Gilbert DM.

Cell. 2019 Feb 7;176(4):816-830.e18. doi: 10.1016/j.cell.2018.11.036. Epub 2018 Dec 27.

PMID:
30595451
4.

RT States: systematic annotation of the human genome using cell type-specific replication timing programs.

Poulet A, Li B, Dubos T, Rivera-Mulia JC, Gilbert DM, Qin ZS.

Bioinformatics. 2018 Nov 22. doi: 10.1093/bioinformatics/bty957. [Epub ahead of print]

PMID:
30475980
5.

Integrative detection and analysis of structural variation in cancer genomes.

Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F.

Nat Genet. 2018 Oct;50(10):1388-1398. doi: 10.1038/s41588-018-0195-8. Epub 2018 Sep 10.

6.

Cellular senescence induces replication stress with almost no affect on DNA replication timing.

Rivera-Mulia JC, Schwerer H, Besnard E, Desprat R, Trevilla-Garcia C, Sima J, Bensadoun P, Zouaoui A, Gilbert DM, Lemaitre JM.

Cell Cycle. 2018;17(13):1667-1681. doi: 10.1080/15384101.2018.1491235. Epub 2018 Aug 21.

PMID:
29963964
7.

Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data.

Yang Y, Gu Q, Zhang Y, Sasaki T, Crivello J, O'Neill RJ, Gilbert DM, Ma J.

Cell Syst. 2018 Aug 22;7(2):208-218.e11. doi: 10.1016/j.cels.2018.05.022. Epub 2018 Jun 20.

8.

Allele-specific control of replication timing and genome organization during development.

Rivera-Mulia JC, Dimond A, Vera D, Trevilla-Garcia C, Sasaki T, Zimmerman J, Dupont C, Gribnau J, Fraser P, Gilbert DM.

Genome Res. 2018 Jun;28(6):800-811. doi: 10.1101/gr.232561.117. Epub 2018 May 7.

9.

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.

Marchal C, Sasaki T, Vera D, Wilson K, Sima J, Rivera-Mulia JC, Trevilla-García C, Nogues C, Nafie E, Gilbert DM.

Nat Protoc. 2018 May;13(5):819-839. doi: 10.1038/nprot.2017.148. Epub 2018 Mar 29.

10.

Single-cell replication profiling to measure stochastic variation in mammalian replication timing.

Dileep V, Gilbert DM.

Nat Commun. 2018 Jan 30;9(1):427. doi: 10.1038/s41467-017-02800-w.

11.

Replication Domains: Genome Compartmentalization into Functional Replication Units.

Zhao PA, Rivera-Mulia JC, Gilbert DM.

Adv Exp Med Biol. 2017;1042:229-257. doi: 10.1007/978-981-10-6955-0_11. Review.

PMID:
29357061
12.

Bacterial artificial chromosomes establish replication timing and sub-nuclear compartment de novo as extra-chromosomal vectors.

Sima J, Bartlett DA, Gordon MR, Gilbert DM.

Nucleic Acids Res. 2018 Feb 28;46(4):1810-1820. doi: 10.1093/nar/gkx1265.

13.

DNA replication timing alterations identify common markers between distinct progeroid diseases.

Rivera-Mulia JC, Desprat R, Trevilla-Garcia C, Cornacchia D, Schwerer H, Sasaki T, Sima J, Fells T, Studer L, Lemaitre JM, Gilbert DM.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E10972-E10980. doi: 10.1073/pnas.1711613114. Epub 2017 Dec 1.

14.

Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia.

Sasaki T, Rivera-Mulia JC, Vera D, Zimmerman J, Das S, Padget M, Nakamichi N, Chang BH, Tyner J, Druker BJ, Weng AP, Civin CI, Eaves CJ, Gilbert DM.

Exp Hematol. 2017 Jul;51:71-82.e3. doi: 10.1016/j.exphem.2017.04.004. Epub 2017 Apr 19.

15.

Unearthing worm replication origins.

Sasaki T, Gilbert DM.

Nat Struct Mol Biol. 2017 Mar 3;24(3):195-196. doi: 10.1038/nsmb.3385. No abstract available.

PMID:
28257138
16.

Spatio-temporal re-organization of replication foci accompanies replication domain consolidation during human pluripotent stem cell lineage specification.

Wilson KA, Elefanty AG, Stanley EG, Gilbert DM.

Cell Cycle. 2016 Sep 16;15(18):2464-75. doi: 10.1080/15384101.2016.1203492. Epub 2016 Jul 19.

17.

Replicating Large Genomes: Divide and Conquer.

Rivera-Mulia JC, Gilbert DM.

Mol Cell. 2016 Jun 2;62(5):756-65. doi: 10.1016/j.molcel.2016.05.007. Review.

18.

Replication timing and transcriptional control: beyond cause and effect-part III.

Rivera-Mulia JC, Gilbert DM.

Curr Opin Cell Biol. 2016 Jun;40:168-178. doi: 10.1016/j.ceb.2016.03.022. Epub 2016 Apr 23. Review.

19.

Influence of ATM-Mediated DNA Damage Response on Genomic Variation in Human Induced Pluripotent Stem Cells.

Lu J, Li H, Baccei A, Sasaki T, Gilbert DM, Lerou PH.

Stem Cells Dev. 2016 May 1;25(9):740-7. doi: 10.1089/scd.2015.0393. Epub 2016 Apr 11.

20.

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.

Foti R, Gnan S, Cornacchia D, Dileep V, Bulut-Karslioglu A, Diehl S, Buness A, Klein FA, Huber W, Johnstone E, Loos R, Bertone P, Gilbert DM, Manke T, Jenuwein T, Buonomo SC.

Mol Cell. 2016 Jan 21;61(2):260-73. doi: 10.1016/j.molcel.2015.12.001. Epub 2015 Dec 24.

Supplemental Content

Loading ...
Support Center