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Items: 1 to 20 of 47


Response to Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".

Riback JA, Bowman MA, Zmyslowski A, Knoverek CR, Jumper J, Kaye EB, Freed KF, Clark PL, Sosnick TR.

Science. 2018 Aug 31;361(6405). pii: eaar7949. doi: 10.1126/science.aar7949.


Collateral Damage: Insulin-Dependent Diabetes Induced With Checkpoint Inhibitors.

Stamatouli AM, Quandt Z, Perdigoto AL, Clark PL, Kluger H, Weiss SA, Gettinger S, Sznol M, Young A, Rushakoff R, Lee J, Bluestone JA, Anderson M, Herold KC.

Diabetes. 2018 Aug;67(8):1471-1480. doi: 10.2337/dbi18-0002. Epub 2018 Jun 24. Review.


Non-fluorescent mutant of green fluorescent protein sheds light on the mechanism of chromophore formation.

Bartkiewicz M, Kazazić S, Krasowska J, Clark PL, Wielgus-Kutrowska B, Bzowska A.

FEBS Lett. 2018 May;592(9):1516-1523. doi: 10.1002/1873-3468.13051. Epub 2018 Apr 20.


GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

Faisal FE, Newaz K, Chaney JL, Li J, Emrich SJ, Clark PL, Milenković T.

Sci Rep. 2017 Nov 2;7(1):14890. doi: 10.1038/s41598-017-14411-y.


%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding.

Rodriguez A, Wright G, Emrich S, Clark PL.

Protein Sci. 2018 Jan;27(1):356-362. doi: 10.1002/pro.3336. Epub 2017 Nov 21.


Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water.

Riback JA, Bowman MA, Zmyslowski AM, Knoverek CR, Jumper JM, Hinshaw JR, Kaye EB, Freed KF, Clark PL, Sosnick TR.

Science. 2017 Oct 13;358(6360):238-241. doi: 10.1126/science.aan5774.


Widespread position-specific conservation of synonymous rare codons within coding sequences.

Chaney JL, Steele A, Carmichael R, Rodriguez A, Specht AT, Ngo K, Li J, Emrich S, Clark PL.

PLoS Comput Biol. 2017 May 5;13(5):e1005531. doi: 10.1371/journal.pcbi.1005531. eCollection 2017 May.


Climbing to the peak of nascent-chain knowledge.

Wilson DN, Clark PL.

Nat Struct Mol Biol. 2016 Nov 4;23(11):949-951. doi: 10.1038/nsmb.3314. No abstract available.


DegP Chaperone Suppresses Toxic Inner Membrane Translocation Intermediates.

Braselmann E, Chaney JL, Champion MM, Clark PL.

PLoS One. 2016 Sep 14;11(9):e0162922. doi: 10.1371/journal.pone.0162922. eCollection 2016.


Molecular chaperones: providing a safe place to weather a midlife protein-folding crisis.

Clark PL, Elcock AH.

Nat Struct Mol Biol. 2016 Jul 6;23(7):621-3. doi: 10.1038/nsmb.3255. No abstract available.


Quality over quantity: optimizing co-translational protein folding with non-'optimal' synonymous codons.

Jacobson GN, Clark PL.

Curr Opin Struct Biol. 2016 Jun;38:102-10. doi: 10.1016/ Epub 2016 Jun 16. Review.


How to Build a Complex, Functional Propeller Protein, From Parts.

Clark PL.

Trends Biochem Sci. 2016 Apr;41(4):290-292. doi: 10.1016/j.tibs.2016.02.010. Epub 2016 Mar 9.


Methylation of insulin DNA in response to proinflammatory cytokines during the progression of autoimmune diabetes in NOD mice.

Rui J, Deng S, Lebastchi J, Clark PL, Usmani-Brown S, Herold KC.

Diabetologia. 2016 May;59(5):1021-9. doi: 10.1007/s00125-016-3897-4. Epub 2016 Feb 24.


Extracellular protease digestion to evaluate membrane protein cell surface localization.

Besingi RN, Clark PL.

Nat Protoc. 2015 Dec;10(12):2074-80. doi: 10.1038/nprot.2015.131. Epub 2015 Nov 19.


Dynamics and Energy Contributions for Transport of Unfolded Pertactin through a Protein Nanopore.

Cressiot B, Braselmann E, Oukhaled A, Elcock AH, Pelta J, Clark PL.

ACS Nano. 2015 Sep 22;9(9):9050-61. doi: 10.1021/acsnano.5b03053. Epub 2015 Aug 28.


Roles for Synonymous Codon Usage in Protein Biogenesis.

Chaney JL, Clark PL.

Annu Rev Biophys. 2015;44:143-66. doi: 10.1146/annurev-biophys-060414-034333. Epub 2015 Feb 26. Review.


Multiple driving forces required for efficient secretion of autotransporter virulence proteins.

Drobnak I, Braselmann E, Clark PL.

J Biol Chem. 2015 Apr 17;290(16):10104-16. doi: 10.1074/jbc.M114.629170. Epub 2015 Feb 10.


Protein folding in the cell, from atom to organism.

Brodsky JL, Clark PL.

FASEB J. 2014 Dec;28(12):5034-8. doi: 10.1096/fj.14-1202ufm. No abstract available.


Of linkers and autochaperones: an unambiguous nomenclature to identify common and uncommon themes for autotransporter secretion.

Drobnak I, Braselmann E, Chaney JL, Leyton DL, Bernstein HD, Lithgow T, Luirink J, Nataro JP, Clark PL.

Mol Microbiol. 2015 Jan;95(1):1-16. doi: 10.1111/mmi.12838. Epub 2014 Nov 24. Review.


Expanding Anfinsen's principle: contributions of synonymous codon selection to rational protein design.

Sander IM, Chaney JL, Clark PL.

J Am Chem Soc. 2014 Jan 22;136(3):858-61. doi: 10.1021/ja411302m. Epub 2014 Jan 13.

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