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Items: 1 to 20 of 563

1.

Identifying Transcriptional Regulatory Modules Among Different Chromatin States in Mouse Neural Stem Cells.

Banerjee S, Zhu H, Tang M, Feng WC, Wu X, Xie H.

Front Genet. 2019 Jan 15;9:731. doi: 10.3389/fgene.2018.00731. eCollection 2018.

2.

Common CHD8 Genomic Targets Contrast With Model-Specific Transcriptional Impacts of CHD8 Haploinsufficiency.

Wade AA, Lim K, Catta-Preta R, Nord AS.

Front Mol Neurosci. 2019 Jan 14;11:481. doi: 10.3389/fnmol.2018.00481. eCollection 2018.

3.

Eomes partners with PU.1 and MITF to Regulate Transcription Factors Critical for osteoclast differentiation.

Carey HA, Hildreth BE 3rd, Samuvel DJ, Thies KA, Rosol TJ, Toribio RE, Charles JF, Ostrowski MC, Sharma SM.

iScience. 2019 Jan 25;11:238-245. doi: 10.1016/j.isci.2018.12.018. Epub 2018 Dec 27.

4.

Optimized ChIP-seq method facilitates transcription factor profiling in human tumors.

Singh AA, Schuurman K, Nevedomskaya E, Stelloo S, Linder S, Droog M, Kim Y, Sanders J, van der Poel H, Bergman AM, Wessels LF, Zwart W.

Life Sci Alliance. 2018 Dec 28;2(1):e201800115. doi: 10.26508/lsa.201800115. eCollection 2019 Feb.

5.

MECP2 Mutation Interrupts Nucleolin-mTOR-P70S6K Signaling in Rett Syndrome Patients.

Olson CO, Pejhan S, Kroft D, Sheikholeslami K, Fuss D, Buist M, Ali Sher A, Del Bigio MR, Sztainberg Y, Siu VM, Ang LC, Sabourin-Felix M, Moss T, Rastegar M.

Front Genet. 2018 Dec 19;9:635. doi: 10.3389/fgene.2018.00635. eCollection 2018.

6.

Genetic correlation between multiple myeloma and chronic lymphocytic leukaemia provides evidence for shared aetiology.

Went M, Sud A, Speedy H, Sunter NJ, Försti A, Law PJ, Johnson DC, Mirabella F, Holroyd A, Li N, Orlando G, Weinhold N, van Duin M, Chen B, Mitchell JS, Mansouri L, Juliusson G, Smedby KE, Jayne S, Majid A, Dearden C, Allsup DJ, Bailey JR, Pratt G, Pepper C, Fegan C, Rosenquist R, Kuiper R, Stephens OW, Bertsch U, Broderick P, Einsele H, Gregory WM, Hillengass J, Hoffmann P, Jackson GH, Jöckel KH, Nickel J, Nöthen MM, da Silva Filho MI, Thomsen H, Walker BA, Broyl A, Davies FE, Hansson M, Goldschmidt H, Dyer MJS, Kaiser M, Sonneveld P, Morgan GJ, Hemminki K, Nilsson B, Catovsky D, Allan JM, Houlston RS.

Blood Cancer J. 2018 Dec 21;9(1):1. doi: 10.1038/s41408-018-0162-8.

7.

Constructing tissue-specific transcriptional regulatory networks via a Markov random field.

Ma S, Jiang T, Jiang R.

BMC Genomics. 2018 Dec 31;19(Suppl 10):884. doi: 10.1186/s12864-018-5277-6.

8.

Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data.

Zhang L, Xue G, Liu J, Li Q, Wang Y.

BMC Genomics. 2018 Dec 31;19(Suppl 10):914. doi: 10.1186/s12864-018-5278-5.

9.

HNF4A Regulates the Formation of Hepatic Progenitor Cells from Human iPSC-Derived Endoderm by Facilitating Efficient Recruitment of RNA Pol II.

DeLaForest A, Di Furio F, Jing R, Ludwig-Kubinski A, Twaroski K, Urick A, Pulakanti K, Rao S, Duncan SA.

Genes (Basel). 2018 Dec 28;10(1). pii: E21. doi: 10.3390/genes10010021.

10.

Comprehensive Analysis of Chromatin States in Atypical Teratoid/Rhabdoid Tumor Identifies Diverging Roles for SWI/SNF and Polycomb in Gene Regulation.

Erkek S, Johann PD, Finetti MA, Drosos Y, Chou HC, Zapatka M, Sturm D, Jones DTW, Korshunov A, Rhyzova M, Wolf S, Mallm JP, Beck K, Witt O, Kulozik AE, Frühwald MC, Northcott PA, Korbel JO, Lichter P, Eils R, Gajjar A, Roberts CWM, Williamson D, Hasselblatt M, Chavez L, Pfister SM, Kool M.

Cancer Cell. 2019 Jan 14;35(1):95-110.e8. doi: 10.1016/j.ccell.2018.11.014. Epub 2018 Dec 27.

PMID:
30595504
11.

Gonadal supporting cells acquire sex-specific chromatin landscapes during mammalian sex determination.

Garcia-Moreno SA, Futtner CR, Salamone IM, Gonen N, Lovell-Badge R, Maatouk DM.

Dev Biol. 2019 Feb 15;446(2):168-179. doi: 10.1016/j.ydbio.2018.12.023. Epub 2018 Dec 27.

12.

Different roles of E proteins in t(8;21) leukemia: E2-2 compromises the function of AETFC and negatively regulates leukemogenesis.

Liu N, Song J, Xie Y, Wang XL, Rong B, Man N, Zhang MM, Zhang Q, Gao FF, Du MR, Zhang Y, Shen J, Xu CH, Hu CL, Wu JC, Liu P, Zhang YL, Xie YY, Liu P, Huang JY, Huang QH, Lan F, Shen S, Nimer SD, Chen Z, Chen SJ, Roeder RG, Wang L, Sun XJ.

Proc Natl Acad Sci U S A. 2019 Jan 15;116(3):890-899. doi: 10.1073/pnas.1809327116. Epub 2018 Dec 28.

PMID:
30593567
13.

Regulation of Hepatic Long Non-coding RNAs by PXR and CAR Agonists in Mouse Liver.

Dempsey JL, Cui JY.

Drug Metab Dispos. 2018 Dec 28. pii: dmd.118.085142. doi: 10.1124/dmd.118.085142. [Epub ahead of print]

14.

Ventx1.1 as a Direct Repressor of Early Neural Gene zic3 in Xenopus laevis.

Umair Z, Kumar S, Kim DH, Rafiq K, Kumar V, Kim S, Park JB, Lee JY, Lee U, Kim J.

Mol Cells. 2018 Dec 31;41(12):1061-1071. doi: 10.14348/molcells.2018.0341. Epub 2018 Nov 26.

15.

Heterodimeric DNA motif synthesis and validations.

Wong KC, Lin J, Li X, Lin Q, Liang C, Song YQ.

Nucleic Acids Res. 2018 Dec 27. doi: 10.1093/nar/gky1297. [Epub ahead of print]

PMID:
30590725
16.

SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis.

Zhao D, Zheng D.

BMC Bioinformatics. 2018 Dec 27;19(1):544. doi: 10.1186/s12859-018-2577-4.

17.

A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome.

Lu J, Cao X, Zhong S.

PLoS Comput Biol. 2018 Dec 26;14(12):e1006673. doi: 10.1371/journal.pcbi.1006673. eCollection 2018 Dec.

18.

Association of low-frequency genetic variants in regulatory regions with nonsyndromic orofacial clefts.

Shaffer JR, LeClair J, Carlson JC, Feingold E, Buxó CJ, Christensen K, Deleyiannis FWB, Field LL, Hecht JT, Moreno L, Orioli IM, Padilla C, Vieira AR, Wehby GL, Murray JC, Weinberg SM, Marazita ML, Leslie EJ.

Am J Med Genet A. 2019 Mar;179(3):467-474. doi: 10.1002/ajmg.a.61002. Epub 2018 Dec 24.

PMID:
30582786
19.

Histone modification in the lung injury and recovery of mice in response to PM2.5 exposure.

Ji X, Yue H, Ku T, Zhang Y, Yun Y, Li G, Sang N.

Chemosphere. 2019 Apr;220:127-136. doi: 10.1016/j.chemosphere.2018.12.079. Epub 2018 Dec 11.

PMID:
30579949
20.

TICA: Transcriptional Interaction and Coregulation Analyzer.

Perna S, Pinoli P, Ceri S, Wong L.

Genomics Proteomics Bioinformatics. 2018 Oct;16(5):342-353. doi: 10.1016/j.gpb.2018.05.004. Epub 2018 Dec 19.

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