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Items: 1 to 20 of 533

1.

Transcriptomic and epigenomic differences in human induced pluripotent stem cells generated from six reprogramming methods.

Churko JM, Lee J, Ameen M, Gu M, Venkatasubramanian M, Diecke S, Sallam K, Im H, Wang G, Gold JD, Salomonis N, Snyder MP, Wu JC.

Nat Biomed Eng. 2017 Oct;1(10):826-837. doi: 10.1038/s41551-017-0141-6. Epub 2017 Oct 3.

2.

Transgenerational analysis of H3K4me3 and H3K27me3 by ChIP-Seq links epigenetic inheritance to metabolism.

An K, Du F, Meng H, Li G, Zhang M, Liu Z, Zhao Z, Zhang Z, Yu D, Wang D, Yang C, Ma W, Yuan L, Zhou M, Duan L, Jin L, Li H, Zhang Y, Su J, Qiao J, Sun Y.

J Genet Genomics. 2018 Mar 20;45(3):169-172. doi: 10.1016/j.jgg.2017.11.004. Epub 2017 Dec 5. No abstract available.

PMID:
29574113
3.

A Novel Distal Enhancer Mediates Inflammation-, PTH-, and Early Onset Murine Kidney Disease-Induced Expression of the Mouse Fgf23 Gene.

Onal M, Carlson AH, Thostenson JD, Benkusky NA, Meyer MB, Lee SM, Pike JW.

JBMR Plus. 2018 Jan;2(1):32-47. doi: 10.1002/jbm4.10023. Epub 2017 Nov 21.

4.

A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression.

Carlin D, Kosnicki K, Garamszegi S, Ideker T, Thorvaldsdóttir H, Reich M, Mesirov J.

Version 2. F1000Res. 2017 Jun 6 [revised 2018 Jan 1];6:784. doi: 10.12688/f1000research.11616.2. eCollection 2017.

5.

Periodontal Biology: Stem Cells, Bmp2 Gene, Transcriptional Enhancers, and Use of Sclerostin Antibody and Pth for Treatment of Periodontal Disease and Bone Loss.

Harris SE, Rediske M, Neitzke R, Rakian A.

Cell Stem Cells Regen Med. 2017;3(1). doi: 10.16966/2472-6990.113. Epub 2017 Jan 27.

6.

SIRT1 regulates Mxd1 during malignant melanoma progression.

Meliso FM, Micali D, Silva CT, Sabedot TS, Coetzee SG, Koch A, Fahlbusch FB, Noushmehr H, Schneider-Stock R, Jasiulionis MG.

Oncotarget. 2017 Oct 3;8(70):114540-114553. doi: 10.18632/oncotarget.21457. eCollection 2017 Dec 29.

7.

The PAX8 cistrome in epithelial ovarian cancer.

Adler EK, Corona RI, Lee JM, Rodriguez-Malave N, Mhawech-Fauceglia P, Sowter H, Hazelett DJ, Lawrenson K, Gayther SA.

Oncotarget. 2017 Nov 27;8(65):108316-108332. doi: 10.18632/oncotarget.22718. eCollection 2017 Dec 12.

8.

Generation of Native Chromatin Immunoprecipitation Sequencing Libraries for Nucleosome Density Analysis.

Lorzadeh A, Lopez Gutierrez R, Jackson L, Moksa M, Hirst M.

J Vis Exp. 2017 Dec 12;(130). doi: 10.3791/56085.

9.

RNA-sequencing reveals genome-wide long non-coding RNAs profiling associated with early development of diabetic nephropathy.

Tang W, Zhang D, Ma X.

Oncotarget. 2017 Nov 11;8(62):105832-105847. doi: 10.18632/oncotarget.22405. eCollection 2017 Dec 1.

10.

Super enhancer associated RAI14 is a new potential biomarker in lung adenocarcinoma.

Yuan C, Hu H, Kuang M, Chen Z, Tao X, Fang S, Sun Y, Zhang Y, Chen H.

Oncotarget. 2017 Oct 27;8(62):105251-105261. doi: 10.18632/oncotarget.22165. eCollection 2017 Dec 1.

11.

A KDM5 Inhibitor Increases Global H3K4 Trimethylation Occupancy and Enhances the Biological Efficacy of 5-Aza-2'-Deoxycytidine.

Leadem BR, Kagiampakis I, Wilson C, Cheung TK, Arnott D, Trojer P, Classon M, Easwaran H, Baylin SB.

Cancer Res. 2018 Mar 1;78(5):1127-1139. doi: 10.1158/0008-5472.CAN-17-1453. Epub 2017 Dec 27.

12.

Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets.

Vishnevsky OV, Bocharnikov AV, Kolchanov NA.

J Bioinform Comput Biol. 2018 Feb;16(1):1740012. doi: 10.1142/S0219720017400121. Epub 2017 Dec 10.

PMID:
29281953
13.

The nuclear matrix protein HNRNPU maintains 3D genome architecture globally in mouse hepatocytes.

Fan H, Lv P, Huo X, Wu J, Wang Q, Cheng L, Liu Y, Tang QQ, Zhang L, Zhang F, Zheng X, Wu H, Wen B.

Genome Res. 2018 Feb;28(2):192-202. doi: 10.1101/gr.224576.117. Epub 2017 Dec 22.

14.

Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis.

Franco HL, Nagari A, Malladi VS, Li W, Xi Y, Richardson D, Allton KL, Tanaka K, Li J, Murakami S, Keyomarsi K, Bedford MT, Shi X, Li W, Barton MC, Dent SYR, Kraus WL.

Genome Res. 2018 Feb;28(2):159-170. doi: 10.1101/gr.226019.117. Epub 2017 Dec 22.

15.

PITX1 promotes chondrogenesis and myogenesis in mouse hindlimbs through conserved regulatory targets.

Wang JS, Infante CR, Park S, Menke DB.

Dev Biol. 2018 Feb 1;434(1):186-195. doi: 10.1016/j.ydbio.2017.12.013. Epub 2017 Dec 20.

16.

Co-regulation of transcription by BRG1 and BRM, two mutually exclusive SWI/SNF ATPase subunits.

Raab JR, Runge JS, Spear CC, Magnuson T.

Epigenetics Chromatin. 2017 Dec 22;10(1):62. doi: 10.1186/s13072-017-0167-8.

17.

Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains.

Ron G, Globerson Y, Moran D, Kaplan T.

Nat Commun. 2017 Dec 21;8(1):2237. doi: 10.1038/s41467-017-02386-3.

18.

YAP repression of the WNT3 gene controls hESC differentiation along the cardiac mesoderm lineage.

Estarás C, Hsu HT, Huang L, Jones KA.

Genes Dev. 2017 Nov 15;31(22):2250-2263. doi: 10.1101/gad.307512.117. Epub 2017 Dec 21.

19.

Purification of nanogram-range immunoprecipitated DNA in ChIP-seq application.

Zhong J, Ye Z, Lenz SW, Clark CR, Bharucha A, Farrugia G, Robertson KD, Zhang Z, Ordog T, Lee JH.

BMC Genomics. 2017 Dec 21;18(1):985. doi: 10.1186/s12864-017-4371-5.

20.

The Ca2+ induced two-component system, CvsSR regulates the Type III secretion system and the extracytoplasmic function sigma-factor AlgU in Pseudomonas syringae pv. tomato DC3000.

Fishman MR, Zhang J, Bronstein PA, Stodghill P, Filiatrault MJ.

J Bacteriol. 2017 Dec 20. pii: JB.00538-17. doi: 10.1128/JB.00538-17. [Epub ahead of print]

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