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Items: 10

1.

Production of dioxygen in the dark: dismutases of oxyanions.

DuBois JL, Ojha S.

Met Ions Life Sci. 2015;15:45-87. doi: 10.1007/978-3-319-12415-5_3. Review.

2.

How pH modulates the reactivity and selectivity of a siderophore-associated flavin monooxygenase.

Frederick RE, Ojha S, Lamb A, Dubois JL.

Biochemistry. 2014 Apr 1;53(12):2007-16. doi: 10.1021/bi401256b. Epub 2014 Mar 19.

3.

Rapid identification of sequences for orphan enzymes to power accurate protein annotation.

Ramkissoon KR, Miller JK, Ojha S, Watson DS, Bomar MG, Galande AK, Shearer AG.

PLoS One. 2013 Dec 30;8(12):e84508. doi: 10.1371/journal.pone.0084508. eCollection 2013.

4.

The Structure-Function Linkage Database.

Akiva E, Brown S, Almonacid DE, Barber AE 2nd, Custer AF, Hicks MA, Huang CC, Lauck F, Mashiyama ST, Meng EC, Mischel D, Morris JH, Ojha S, Schnoes AM, Stryke D, Yunes JM, Ferrin TE, Holliday GL, Babbitt PC.

Nucleic Acids Res. 2014 Jan;42(Database issue):D521-30. doi: 10.1093/nar/gkt1130. Epub 2013 Nov 23.

5.

The chlorite dismutase (HemQ) from Staphylococcus aureus has a redox-sensitive heme and is associated with the small colony variant phenotype.

Mayfield JA, Hammer ND, Kurker RC, Chen TK, Ojha S, Skaar EP, DuBois JL.

J Biol Chem. 2013 Aug 9;288(32):23488-504. doi: 10.1074/jbc.M112.442335. Epub 2013 Jun 4.

6.

The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase.

Dai X, Mashiguchi K, Chen Q, Kasahara H, Kamiya Y, Ojha S, DuBois J, Ballou D, Zhao Y.

J Biol Chem. 2013 Jan 18;288(3):1448-57. doi: 10.1074/jbc.M112.424077. Epub 2012 Nov 27.

7.

Mutations in PNKD causing paroxysmal dyskinesia alters protein cleavage and stability.

Shen Y, Lee HY, Rawson J, Ojha S, Babbitt P, Fu YH, Ptácek LJ.

Hum Mol Genet. 2011 Jun 15;20(12):2322-32. doi: 10.1093/hmg/ddr125. Epub 2011 Apr 12.

8.

Evolution of function in the "two dinucleotide binding domains" flavoproteins.

Ojha S, Meng EC, Babbitt PC.

PLoS Comput Biol. 2007 Jul;3(7):e121.

9.

Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database.

Pegg SC, Brown SD, Ojha S, Seffernick J, Meng EC, Morris JH, Chang PJ, Huang CC, Ferrin TE, Babbitt PC.

Biochemistry. 2006 Feb 28;45(8):2545-55.

PMID:
16489747
10.

Representing structure-function relationships in mechanistically diverse enzyme superfamilies.

Pegg SC, Brown S, Ojha S, Huang CC, Ferrin TE, Babbitt PC.

Pac Symp Biocomput. 2005:358-69.

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