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Items: 1 to 20 of 116


Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Sayers S, Li L, Ong E, Deng S, Fu G, Lin Y, Yang B, Zhang S, Fa Z, Zhao B, Xiang Z, Li Y, Zhao XM, Olszewski MA, Chen L, He Y.

Nucleic Acids Res. 2019 Jan 8;47(D1):D693-D700. doi: 10.1093/nar/gky999.


Novel Immunoprotective Proteins of Streptococcus pneumoniae Identified by Opsonophagocytosis Killing Screen.

Wang Y, Wen Z, Pan X, Briles DE, He Y, Zhang JR.

Infect Immun. 2018 Aug 22;86(9). pii: e00423-18. doi: 10.1128/IAI.00423-18. Print 2018 Sep.


Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.

Hur J, Özgür A, He Y.

J Biomed Semantics. 2018 Jun 7;9(1):17. doi: 10.1186/s13326-018-0185-x.


Ontology-Based Meta-Analysis of Animal and Human Adverse Events Associated With Licensed Brucellosis Vaccines.

Xie J, Wang J, Li Z, Wang W, Pang Y, He Y.

Front Pharmacol. 2018 May 15;9:503. doi: 10.3389/fphar.2018.00503. eCollection 2018.


The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.

He Y, Xiang Z, Zheng J, Lin Y, Overton JA, Ong E.

J Biomed Semantics. 2018 Jan 12;9(1):3. doi: 10.1186/s13326-017-0169-2. Review.


Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

Ong E, Xie J, Ni Z, Liu Q, Sarntivijai S, Lin Y, Cooper D, Terryn R, Stathias V, Chung C, Schürer S, He Y.

BMC Bioinformatics. 2017 Dec 21;18(Suppl 17):556. doi: 10.1186/s12859-017-1981-5.


Ontology-based systematic representation and analysis of traditional Chinese drugs against rheumatism.

Liu Q, Wang J, Zhu Y, He Y.

BMC Syst Biol. 2017 Dec 21;11(Suppl 7):130. doi: 10.1186/s12918-017-0510-5.


Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge.

Sarntivijai S, Diehl AD, He Y.

BMC Bioinformatics. 2017 Dec 21;18(Suppl 17):560. doi: 10.1186/s12859-017-1976-2.


Comparison, alignment, and synchronization of cell line information between CLO and EFO.

Ong E, Sarntivijai S, Jupp S, Parkinson H, He Y.

BMC Bioinformatics. 2017 Dec 21;18(Suppl 17):557. doi: 10.1186/s12859-017-1979-z.


Identification of New Features from Known Bacterial Protective Vaccine Antigens Enhances Rational Vaccine Design.

Ong E, Wong MU, He Y.

Front Immunol. 2017 Oct 26;8:1382. doi: 10.3389/fimmu.2017.01382. eCollection 2017.


Ontology-Based Vaccine Adverse Event Representation and Analysis.

Xie J, He Y.

Adv Exp Med Biol. 2017;1028:89-103. doi: 10.1007/978-981-10-6041-0_6. Review.


Conservation in gene encoding Mycobacterium tuberculosis antigen Rv2660 and a high predicted population coverage of H56 multistage vaccine in South Africa.

Perez-Martinez AP, Ong E, Zhang L, Marrs CF, He Y, Yang Z.

Infect Genet Evol. 2017 Nov;55:244-250. doi: 10.1016/j.meegid.2017.09.023. Epub 2017 Sep 21.


Analysis of Individual Differences in Vaccine Pharmacovigilance Using VAERS Data and MedDRA System Organ Classes: A Use Case Study With Trivalent Influenza Vaccine.

Du J, Cai Y, Chen Y, He Y, Tao C.

Biomed Inform Insights. 2017 Apr 11;9:1178222617700627. doi: 10.1177/1178222617700627. eCollection 2017.


Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.

Hur J, Özgür A, He Y.

J Biomed Semantics. 2017 Mar 14;8(1):12. doi: 10.1186/s13326-017-0122-4.


Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data.

Knowledge Base workgroup of the Observational Health Data Sciences and Informatics (OHDSI) collaborative.

J Biomed Semantics. 2017 Mar 7;8(1):11. doi: 10.1186/s13326-017-0115-3.


Safety and immunogenicity of mammalian cell derived and Modified Vaccinia Ankara vectored African swine fever subunit antigens in swine.

Lopera-Madrid J, Osorio JE, He Y, Xiang Z, Adams LG, Laughlin RC, Mwangi W, Subramanya S, Neilan J, Brake D, Burrage TG, Brown WC, Clavijo A, Bounpheng MA.

Vet Immunol Immunopathol. 2017 Mar;185:20-33. doi: 10.1016/j.vetimm.2017.01.004. Epub 2017 Jan 24.


Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology.

Ni Z, Chen Y, Ong E, He Y.

Int J Mol Sci. 2017 Feb 21;18(2). pii: E458. doi: 10.3390/ijms18020458.

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