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Items: 1 to 20 of 24

1.

Longitudinal Mapping of Cortical Thickness Measurements: An Alzheimer's Disease Neuroimaging Initiative-Based Evaluation Study.

Tustison NJ, Holbrook AJ, Avants BB, Roberts JM, Cook PA, Reagh ZM, Duda JT, Stone JR, Gillen DL, Yassa MA; Alzheimer’s Disease Neuroimaging Initiative.

J Alzheimers Dis. 2019;71(1):165-183. doi: 10.3233/JAD-190283.

PMID:
31356207
2.

Learning image-based spatial transformations via convolutional neural networks: A review.

Tustison NJ, Avants BB, Gee JC.

Magn Reson Imaging. 2019 Dec;64:142-153. doi: 10.1016/j.mri.2019.05.037. Epub 2019 Jun 11. Review.

PMID:
31200026
3.

Convolutional Neural Networks with Template-Based Data Augmentation for Functional Lung Image Quantification.

Tustison NJ, Avants BB, Lin Z, Feng X, Cullen N, Mata JF, Flors L, Gee JC, Altes TA, Mugler Iii JP, Qing K.

Acad Radiol. 2019 Mar;26(3):412-423. doi: 10.1016/j.acra.2018.08.003. Epub 2018 Sep 6.

PMID:
30195415
4.

A population level atlas of Mus musculus craniofacial skeleton and automated image-based shape analysis.

Maga AM, Tustison NJ, Avants BB.

J Anat. 2017 Sep;231(3):433-443. doi: 10.1111/joa.12645. Epub 2017 Jun 28.

5.

Conversion Discriminative Analysis on Mild Cognitive Impairment Using Multiple Cortical Features from MR Images.

Guo S, Lai C, Wu C, Cen G; Alzheimer's Disease Neuroimaging Initiative.

Front Aging Neurosci. 2017 May 18;9:146. doi: 10.3389/fnagi.2017.00146. eCollection 2017. Erratum in: Front Aging Neurosci. 2017 Sep 05;9:293.

6.

Automated segmentation of chronic stroke lesions using LINDA: Lesion identification with neighborhood data analysis.

Pustina D, Coslett HB, Turkeltaub PE, Tustison N, Schwartz MF, Avants B.

Hum Brain Mapp. 2016 Apr;37(4):1405-21. doi: 10.1002/hbm.23110. Epub 2016 Jan 12.

7.

The pediatric template of brain perfusion.

Avants BB, Duda JT, Kilroy E, Krasileva K, Jann K, Kandel BT, Tustison NJ, Yan L, Jog M, Smith R, Wang Y, Dapretto M, Wang DJ.

Sci Data. 2015 Feb 3;2:150003. doi: 10.1038/sdata.2015.3. eCollection 2015.

8.

Neuroinformatics and the The Insight ToolKit.

Avants BB, Johnson HJ, Tustison NJ.

Front Neuroinform. 2015 Mar 26;9:5. doi: 10.3389/fninf.2015.00005. eCollection 2015. No abstract available.

9.

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N, Corso JJ, Criminisi A, Das T, Delingette H, Demiralp Ç, Durst CR, Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P, Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E, Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J, Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM, Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B, Zikic D, Prastawa M, Reyes M, Van Leemput K.

IEEE Trans Med Imaging. 2015 Oct;34(10):1993-2024. doi: 10.1109/TMI.2014.2377694. Epub 2014 Dec 4. Review.

10.

Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR.

Tustison NJ, Shrinidhi KL, Wintermark M, Durst CR, Kandel BM, Gee JC, Grossman MC, Avants BB.

Neuroinformatics. 2015 Apr;13(2):209-25. doi: 10.1007/s12021-014-9245-2.

PMID:
25433513
11.

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements.

Tustison NJ, Cook PA, Klein A, Song G, Das SR, Duda JT, Kandel BM, van Strien N, Stone JR, Gee JC, Avants BB.

Neuroimage. 2014 Oct 1;99:166-79. doi: 10.1016/j.neuroimage.2014.05.044. Epub 2014 May 29.

PMID:
24879923
12.

The Insight ToolKit image registration framework.

Avants BB, Tustison NJ, Stauffer M, Song G, Wu B, Gee JC.

Front Neuroinform. 2014 Apr 28;8:44. doi: 10.3389/fninf.2014.00044. eCollection 2014.

13.

Explicit B-spline regularization in diffeomorphic image registration.

Tustison NJ, Avants BB.

Front Neuroinform. 2013 Dec 23;7:39. doi: 10.3389/fninf.2013.00039. eCollection 2013.

14.

Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences.

Tustison NJ, Johnson HJ, Rohlfing T, Klein A, Ghosh SS, Ibanez L, Avants BB.

Front Neurosci. 2013 Sep 9;7:162. doi: 10.3389/fnins.2013.00162. eCollection 2013. No abstract available.

15.

Logical circularity in voxel-based analysis: normalization strategy may induce statistical bias.

Tustison NJ, Avants BB, Cook PA, Kim J, Whyte J, Gee JC, Stone JR.

Hum Brain Mapp. 2014 Mar;35(3):745-59. doi: 10.1002/hbm.22211. Epub 2012 Nov 14.

PMID:
23151955
16.

Ventilation-based segmentation of the lungs using hyperpolarized (3)He MRI.

Tustison NJ, Avants BB, Flors L, Altes TA, de Lange EE, Mugler JP 3rd, Gee JC.

J Magn Reson Imaging. 2011 Oct;34(4):831-41. doi: 10.1002/jmri.22738. Epub 2011 Aug 11.

PMID:
21837781
17.

Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge.

Murphy K, van Ginneken B, Reinhardt JM, Kabus S, Ding K, Deng X, Cao K, Du K, Christensen GE, Garcia V, Vercauteren T, Ayache N, Commowick O, Malandain G, Glocker B, Paragios N, Navab N, Gorbunova V, Sporring J, de Bruijne M, Han X, Heinrich MP, Schnabel JA, Jenkinson M, Lorenz C, Modat M, McClelland JR, Ourselin S, Muenzing SE, Viergever MA, De Nigris D, Collins DL, Arbel T, Peroni M, Li R, Sharp GC, Schmidt-Richberg A, Ehrhardt J, Werner R, Smeets D, Loeckx D, Song G, Tustison N, Avants B, Gee JC, Staring M, Klein S, Stoel BC, Urschler M, Werlberger M, Vandemeulebroucke J, Rit S, Sarrut D, Pluim JP.

IEEE Trans Med Imaging. 2011 Nov;30(11):1901-20. doi: 10.1109/TMI.2011.2158349. Epub 2011 May 31.

PMID:
21632295
18.

An open source multivariate framework for n-tissue segmentation with evaluation on public data.

Avants BB, Tustison NJ, Wu J, Cook PA, Gee JC.

Neuroinformatics. 2011 Dec;9(4):381-400. doi: 10.1007/s12021-011-9109-y.

19.

Topological well-composedness and glamorous glue: a digital gluing algorithm for topologically constrained front propagation.

Tustison NJ, Avants BB, Siqueira M, Gee JC.

IEEE Trans Image Process. 2011 Jun;20(6):1756-61. doi: 10.1109/TIP.2010.2095021. Epub 2010 Nov 29.

PMID:
21118779
20.

Sparse unbiased analysis of anatomical variance in longitudinal imaging.

Avants B, Cook PA, McMillan C, Grossman M, Tustison NJ, Zheng Y, Gee JC.

Med Image Comput Comput Assist Interv. 2010;13(Pt 1):324-31.

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