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Host-microbiota interactions: from holobiont theory to analysis.

Simon JC, Marchesi JR, Mougel C, Selosse MA.

Microbiome. 2019 Jan 11;7(1):5. doi: 10.1186/s40168-019-0619-4.


Correction to: Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant.

Sirová D, Bárta J, Šimek K, Posch T, Pech J, Stone J, Borovec J, Adamec L, Vrba J.

Microbiome. 2019 Jan 5;7(1):4. doi: 10.1186/s40168-018-0617-y.


Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera.

Yang SH, Tandon K, Lu CY, Wada N, Shih CJ, Hsiao SS, Jane WN, Lee TC, Yang CM, Liu CT, Denis V, Wu YT, Wang LT, Huang L, Lee DC, Wu YW, Yamashiro H, Tang SL.

Microbiome. 2019 Jan 4;7(1):3. doi: 10.1186/s40168-018-0616-z.


Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children.

Zhong H, Penders J, Shi Z, Ren H, Cai K, Fang C, Ding Q, Thijs C, Blaak EE, Stehouwer CDA, Xu X, Yang H, Wang J, Wang J, Jonkers DMAE, Masclee AAM, Brix S, Li J, Arts ICW, Kristiansen K.

Microbiome. 2019 Jan 4;7(1):2. doi: 10.1186/s40168-018-0608-z.


Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases.

Armstrong H, Alipour M, Valcheva R, Bording-Jorgensen M, Jovel J, Zaidi D, Shah P, Lou Y, Ebeling C, Mason AL, Lafleur D, Jerasi J, Wong GK, Madsen K, Carroll MW, Huynh HQ, Dieleman LA, Wine E.

Microbiome. 2019 Jan 3;7(1):1. doi: 10.1186/s40168-018-0604-3.


Rhizosphere microorganisms can influence the timing of plant flowering.

Lu T, Ke M, Lavoie M, Jin Y, Fan X, Zhang Z, Fu Z, Sun L, Gillings M, Peñuelas J, Qian H, Zhu YG.

Microbiome. 2018 Dec 26;6(1):231. doi: 10.1186/s40168-018-0615-0.


Metatranscriptomic and comparative genomic insights into resuscitation mechanisms during enrichment culturing.

Mu DS, Liang QY, Wang XM, Lu DC, Shi MJ, Chen GJ, Du ZJ.

Microbiome. 2018 Dec 26;6(1):230. doi: 10.1186/s40168-018-0613-2.


Wild bees and their nests host Paenibacillus bacteria with functional potential of avail.

Keller A, Brandel A, Becker MC, Balles R, Abdelmohsen UR, Ankenbrand MJ, Sickel W.

Microbiome. 2018 Dec 22;6(1):229. doi: 10.1186/s40168-018-0614-1.


Design and application of a novel two-amplicon approach for defining eukaryotic microbiota.

Popovic A, Bourdon C, Wang PW, Guttman DS, Voskuijl W, Grigg ME, Bandsma RHJ, Parkinson J.

Microbiome. 2018 Dec 20;6(1):228. doi: 10.1186/s40168-018-0612-3.


Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant.

Sirová D, Bárta J, Šimek K, Posch T, Pech J, Stone J, Borovec J, Adamec L, Vrba J.

Microbiome. 2018 Dec 17;6(1):225. doi: 10.1186/s40168-018-0600-7. Erratum in: Microbiome. 2019 Jan 5;7(1):4.


Signatures within the esophageal microbiome are associated with host genetics, age, and disease.

Deshpande NP, Riordan SM, Castaño-Rodríguez N, Wilkins MR, Kaakoush NO.

Microbiome. 2018 Dec 17;6(1):227. doi: 10.1186/s40168-018-0611-4.


Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data.

Davis NM, Proctor DM, Holmes SP, Relman DA, Callahan BJ.

Microbiome. 2018 Dec 17;6(1):226. doi: 10.1186/s40168-018-0605-2.


The bacterial community significantly promotes cast iron corrosion in reclaimed wastewater distribution systems.

Zhang G, Li B, Liu J, Luan M, Yue L, Jiang XT, Yu K, Guan Y.

Microbiome. 2018 Dec 13;6(1):222. doi: 10.1186/s40168-018-0610-5.


Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages.

Jacquiod S, Nunes I, Brejnrod A, Hansen MA, Holm PE, Johansen A, Brandt KK, Priemé A, Sørensen SJ.

Microbiome. 2018 Dec 13;6(1):223. doi: 10.1186/s40168-018-0606-1.


Antibiotics may increase triazine herbicide exposure risk via disturbing gut microbiota.

Zhan J, Liang Y, Liu D, Ma X, Li P, Liu C, Liu X, Wang P, Zhou Z.

Microbiome. 2018 Dec 13;6(1):224. doi: 10.1186/s40168-018-0602-5.


A comparative study of the gut microbiota in immune-mediated inflammatory diseases-does a common dysbiosis exist?

Forbes JD, Chen CY, Knox NC, Marrie RA, El-Gabalawy H, de Kievit T, Alfa M, Bernstein CN, Van Domselaar G.

Microbiome. 2018 Dec 13;6(1):221. doi: 10.1186/s40168-018-0603-4.


Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation.

Edlund A, Yang Y, Yooseph S, He X, Shi W, McLean JS.

Microbiome. 2018 Dec 6;6(1):217. doi: 10.1186/s40168-018-0591-4.


Citizen science charts two major "stomatotypes" in the oral microbiome of adolescents and reveals links with habits and drinking water composition.

Willis JR, González-Torres P, Pittis AA, Bejarano LA, Cozzuto L, Andreu-Somavilla N, Alloza-Trabado M, Valentín A, Ksiezopolska E, Company C, Onywera H, Montfort M, Hermoso A, Iraola-Guzmán S, Saus E, Labeeuw A, Carolis C, Hecht J, Ponomarenko J, Gabaldón T.

Microbiome. 2018 Dec 6;6(1):218. doi: 10.1186/s40168-018-0592-3.


Gene probing reveals the widespread distribution, diversity and abundance of isoprene-degrading bacteria in the environment.

Carrión O, Larke-Mejía NL, Gibson L, Farhan Ul Haque M, Ramiro-García J, McGenity TJ, Murrell JC.

Microbiome. 2018 Dec 7;6(1):219. doi: 10.1186/s40168-018-0607-0.


Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation.

Draper LA, Ryan FJ, Smith MK, Jalanka J, Mattila E, Arkkila PA, Ross RP, Satokari R, Hill C.

Microbiome. 2018 Dec 10;6(1):220. doi: 10.1186/s40168-018-0598-x.

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