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Items: 1 to 20 of 219


Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria.

Reimer A, Weedmark K, Petkau A, Peterson CL, Walker M, Knox N, Kent H, Mabon P, Berry C, Tyler S, Tschetter L, Jerome M, Allen V, Hoang L, Bekal S, Clark C, Nadon C, Van Domselaar G, Pagotto F, Graham M, Farber J, Gilmour M.

Microb Genom. 2019 Jan 16. doi: 10.1099/mgen.0.000237. [Epub ahead of print]


Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1.

Hamidian M, Hawkey J, Wick R, Holt KE, Hall RM.

Microb Genom. 2019 Jan 16. doi: 10.1099/mgen.0.000242. [Epub ahead of print]


Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame.

Chattaway MA, Chandra N, Painset A, Shah V, Lamb P, Acheampong E, Lo J, Patel B, Larkin L, Sergeant M, Cormican M, Litrup E, Crook P.

Microb Genom. 2019 Jan 16. doi: 10.1099/mgen.0.000248. [Epub ahead of print]


Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak.

Gotoh Y, Taniguchi T, Yoshimura D, Katsura K, Saeki Y, Hirabara Y, Fukuda M, Takajo I, Tomida J, Kawamura Y, Ogura Y, Itoh T, Misawa N, Okayama A, Hayashi T.

Microb Genom. 2018 Dec;4(12). doi: 10.1099/mgen.0.000236.


Where the plasmids roam: large-scale sequence analysis reveals plasmids with large host ranges.

Brooks LE, Kaze M, Sistrom M.

Microb Genom. 2019 Jan 9. doi: 10.1099/mgen.0.000244. [Epub ahead of print]


Genomic analysis of bacteria in the Acute Oak Decline pathobiome.

Doonan J, Denman S, Pachebat JA, McDonald JE.

Microb Genom. 2019 Jan 8. doi: 10.1099/mgen.0.000240. [Epub ahead of print]


Genome analysis provides insights into the epidemiology of infection with Flavobacterium psychrophilum among farmed salmonid fish in Sweden.

Söderlund R, Hakhverdyan M, Aspán A, Jansson E.

Microb Genom. 2018 Dec;4(12). doi: 10.1099/mgen.0.000241. Epub 2018 Dec 13.


DORA Editorial.

Parish T, Harris M, Fry N, Mathee K, Trujillo ME, Bentley S, Thomson N.

Microb Genom. 2018 Dec;4(12). doi: 10.1099/mgen.0.000238. Epub 2018 Dec 5. No abstract available.


TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data.

Sheppard AE, Stoesser N, German-Mesner I, Vegesana K, Sarah Walker A, Crook DW, Mathers AJ.

Microb Genom. 2018 Dec;4(12). doi: 10.1099/mgen.0.000232. Epub 2018 Nov 22.


PANINI: Pangenome Neighbour Identification for Bacterial Populations.

Abudahab K, Prada JM, Yang Z, Bentley SD, Croucher NJ, Corander J, Aanensen DM.

Microb Genom. 2018 Nov 22. doi: 10.1099/mgen.0.000220. [Epub ahead of print]


Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing.

Ring N, Abrahams JS, Jain M, Olsen H, Preston A, Bagby S.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000234. Epub 2018 Nov 21.


The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis.

Johnning A, Karami N, Tång Hallbäck E, Müller V, Nyberg L, Buongermino Pereira M, Stewart C, Ambjörnsson T, Westerlund F, Adlerberth I, Kristiansson E.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000233. Epub 2018 Nov 21.


SynerClust: a highly scalable, synteny-aware orthologue clustering tool.

Georgescu CH, Manson AL, Griggs AD, Desjardins CA, Pironti A, Wapinski I, Abeel T, Haas BJ, Earl AM.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000231. Epub 2018 Nov 12.


Identification of a chimeric emm gene and novel emm pattern in currently circulating strains of emm4 Group A Streptococcus.

DebRoy S, Li X, Kalia A, Galloway-Pena J, Shah BJ, Fowler VG, Flores AR, Shelburne SA.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000235. Epub 2018 Nov 9.


A global genomic approach uncovers novel components for twitching motility-mediated biofilm expansion in Pseudomonas aeruginosa.

Nolan LM, Whitchurch CB, Barquist L, Katrib M, Boinett CJ, Mayho M, Goulding D, Charles IG, Filloux A, Parkhill J, Cain AK.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000229. Epub 2018 Nov 1.


mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species.

Arredondo-Alonso S, Rogers MRC, Braat JC, Verschuuren TD, Top J, Corander J, Willems RJL, Schürch AC.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000224. Epub 2018 Nov 1.


Corrigendum: Comparative pan-genomic analyses of Orientia tsutsugamushi reveal an exceptional model of bacterial evolution driving genomic diversity.

Fleshman A, Mullins K, Sahl J, Hepp C, Nieto N, Wiggins K, Hornstra H, Kelly D, Chan TC, Phetsouvanh R, Dittrich S, Panyanivong P, Paris D, Newton P, Richards A, Pearson T.

Microb Genom. 2018 Oct;4(10). doi: 10.1099/mgen.0.000230. No abstract available.


PhasomeIt: an 'omics' approach to cataloguing the potential breadth of phase variation in the genus Campylobacter.

Aidley J, Wanford JJ, Green LR, Sheppard SK, Bayliss CD.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000228. Epub 2018 Oct 23.


Spatial structuring of a Legionella pneumophila population within the water system of a large occupational building.

David S, Mentasti M, Lai S, Vaghji L, Ready D, Chalker VJ, Parkhill J.

Microb Genom. 2018 Oct;4(10). doi: 10.1099/mgen.0.000226. Epub 2018 Oct 12.


Genomic epidemiology of clinical Campylobacter spp. at a single health trust site.

Dunn SJ, Pascoe B, Turton J, Fleming V, Diggle M, Sheppard SK, McNally A, Manning G.

Microb Genom. 2018 Oct;4(10). doi: 10.1099/mgen.0.000227. Epub 2018 Oct 11.

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