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Items: 1 to 20 of 451

1.

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation.

Shang Z, Chen D, Wang Q, Wang S, Deng Q, Wu L, Liu C, Ding X, Wang S, Zhong J, Zhang D, Cai X, Zhu S, Yang H, Liu L, Fink JL, Chen F, Liu X, Gao Z, Xu X.

Gigascience. 2018 Sep 18. doi: 10.1093/gigascience/giy117. [Epub ahead of print]

PMID:
30239706
2.

Extensive evaluation of the generalized relevance network approach to inferring gene regulatory networks.

Kuzmanovski V, Todorovski L, Džeroski S.

Gigascience. 2018 Sep 18. doi: 10.1093/gigascience/giy118. [Epub ahead of print]

PMID:
30239704
3.

Chromosome-level genome assembly of the spotted sea bass, Lateolabrax maculatus.

Shao C, Li C, Wang N, Qin Y, Xu W, Liu Q, Zhou Q, Zhao Y, Li X, Liu S, Chen X, Mahboob S, Liu X, Chen S.

Gigascience. 2018 Sep 18. doi: 10.1093/gigascience/giy114. [Epub ahead of print]

PMID:
30239684
4.

A draft genome assembly of the Chinese sillago (Sillago sinica), the first reference genome for Sillaginidae fishes.

Xu S, Xiao S, Zhu S, Zeng X, Luo J, Liu J, Gao T, Chen N.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy108.

PMID:
30202912
5.

Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis).

Zhao H, Gao Z, Wang L, Wang J, Wang S, Fei B, Chen C, Shi C, Liu X, Zhang H, Lou Y, Chen L, Sun H, Zhou X, Wang S, Zhang C, Xu H, Li L, Yang Y, Wei Y, Yang W, Gao Q, Yang H, Zhao S, Jiang Z.

Gigascience. 2018 Sep 8. doi: 10.1093/gigascience/giy115. [Epub ahead of print]

PMID:
30202850
6.

Sequana Coverage: Detection and Characterization of Genomic Variations using Running Median and Mixture Models.

Desvillechabrol D, Bouchier C, Kennedy S, Cokelaer T.

Gigascience. 2018 Sep 6. doi: 10.1093/gigascience/giy110. [Epub ahead of print]

PMID:
30192951
7.

Metabolomics investigation of dietary effects on flesh quality in grass carp (Ctenopharyngodon idellus).

Zhao H, Chong J, Tang R, Li L, Xia J, Li D.

Gigascience. 2018 Sep 6. doi: 10.1093/gigascience/giy111. [Epub ahead of print]

PMID:
30192945
8.

Ximmer: A system for improving accuracy and consistency of CNV calling from exome data.

Sadedin SP, Ellis JA, Masters SL, Oshlack A.

Gigascience. 2018 Sep 6. doi: 10.1093/gigascience/giy112. [Epub ahead of print]

PMID:
30192941
9.

Comparative genomics and transcriptomics of Chrysolophus provide insights into the evolution of complex plumage colouration.

Gao G, Xu M, Bai C, Yang Y, Li G, Xu J, Wei Z, Min J, Su G, Zhou X, Guo J, Hao Y, Zhang G, Yang X, Xu X, Widelitz RB, Chuong CM, Zhang C, Yin J, Zuo Y.

Gigascience. 2018 Sep 6. doi: 10.1093/gigascience/giy113. [Epub ahead of print]

PMID:
30192940
10.

The metagenome of the female upper reproductive tract.

Chen C, Li F, Wei W, Wang Z, Dai J, Hao L, Song L, Zhang X, Zeng L, Du H, Tang H, Liu N, Yang H, Wang J, Madsen L, Brix S, Kristiansen K, Xu X, Li J, Wu R, Jia H.

Gigascience. 2018 Sep 6. doi: 10.1093/gigascience/giy107. [Epub ahead of print]

PMID:
30192933
11.

ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes.

Yu SH, Vogel J, Förstner KU.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy096.

12.

Genome-wide definition of selective sweeps reveals molecular evidence of trait-driven domestication among elite goat (Capra species) breeds for the production of dairy, cashmere, and meat.

Zhang B, Chang L, Lan YX, Asif N, Guan FL, Fu KD, Li B, Yan XC, Zhang BH, Zhang YX, Huang ZY, Chen H, Yu J, Li BS.

Gigascience. 2018 Aug 27. doi: 10.1093/gigascience/giy105. [Epub ahead of print]

PMID:
30165633
13.

Population genomics of wild Chinese rhesus macaques reveals a dynamic demographic history and local adaptation, with implications for biomedical research.

Liu Z, Tan X, Orozco-terWengel P, Zhou X, Zhang L, Tian S, Yan Z, Xu H, Ren B, Zhang P, Xiang Z, Sun B, Roos C, Bruford MW, Li M.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy106.

PMID:
30165519
14.

PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics.

Zheng J, Richardson TG, Millard LAC, Hemani G, Elsworth BL, Raistrick CA, Vilhjalmsson B, Neale BM, Haycock PC, Smith GD, Gaunt TR.

Gigascience. 2018 Aug 1;7(8). doi: 10.1093/gigascience/giy090.

15.

Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data.

Herzinger S, Grouès V, Gu W, Satagopam V, Banda P, Trefois C, Schneider R.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy109.

PMID:
30165440
16.

Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes.

Li X, Liang S, Xia Z, Qu J, Liu H, Liu C, Yang H, Wang J, Madsen L, Hou Y, Li J, Jia H, Kristiansen K, Xiao L.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy100.

PMID:
30137359
17.

Draft genome of Glyptosternon maculatum, an endemic fish from Tibet Plateau.

Liu H, Liu Q, Chen Z, Liu Y, Zhou C, Liang Q, Ma C, Zhou J, Pan Y, Chen M, Wangjiu, Jiang W, Xiao S, Mou Z.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy104.

PMID:
30124856
18.

Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments.

Gustafsson OJR, Winderbaum LJ, Condina MR, Boughton BA, Hamilton BR, Undheim EAB, Becker M, Hoffmann P.

Gigascience. 2018 Aug 14. doi: 10.1093/gigascience/giy102. [Epub ahead of print]

PMID:
30124809
19.

The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation.

Liu C, Zhang Y, Ren Y, Wang H, Li S, Jiang F, Yin L, Qiao X, Zhang G, Qian W, Liu B, Fan W.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy101.

20.

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome.

VanBuren R, Wai CM, Colle M, Wang J, Sullivan S, Bushakra JM, Liachko I, Vining KJ, Dossett M, Finn CE, Jibran R, Chagné D, Childs K, Edger PP, Mockler TC, Bassil NV.

Gigascience. 2018 Aug 1;7(8). doi: 10.1093/gigascience/giy094.

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