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Items: 1 to 20 of 41

1.

Slanted support window-based stereo matching for surface reconstruction of microscopic samples.

Baghaie A, Zhang C, Bakhshinejad A, Owen HA, Chao H, D'Souza RM, Yu Z.

Micron. 2017 Dec;103:12-21. doi: 10.1016/j.micron.2017.09.003. Epub 2017 Sep 8.

PMID:
28942369
2.

Three-dimensional reconstruction of highly complex microscopic samples using scanning electron microscopy and optical flow estimation.

Baghaie A, Pahlavan Tafti A, Owen HA, D'Souza RM, Yu Z.

PLoS One. 2017 Apr 6;12(4):e0175078. doi: 10.1371/journal.pone.0175078. eCollection 2017.

3.

SD-SEM: sparse-dense correspondence for 3D reconstruction of microscopic samples.

Baghaie A, Tafti AP, Owen HA, D'Souza RM, Yu Z.

Micron. 2017 Jun;97:41-55. doi: 10.1016/j.micron.2017.03.009. Epub 2017 Mar 20.

PMID:
28343096
4.

Involuntary eye motion correction in retinal optical coherence tomography: Hardware or software solution?

Baghaie A, Yu Z, D'Souza RM.

Med Image Anal. 2017 Apr;37:129-145. doi: 10.1016/j.media.2017.02.002. Epub 2017 Feb 4. Review.

5.
6.

3DSEM++: Adaptive and intelligent 3D SEM surface reconstruction.

Tafti AP, Holz JD, Baghaie A, Owen HA, He MM, Yu Z.

Micron. 2016 Aug;87:33-45. doi: 10.1016/j.micron.2016.05.004. Epub 2016 May 7.

PMID:
27200484
7.

3DSEM: A 3D microscopy dataset.

Tafti AP, Kirkpatrick AB, Holz JD, Owen HA, Yu Z.

Data Brief. 2015 Dec 2;6:112-6. doi: 10.1016/j.dib.2015.11.018. eCollection 2016 Mar.

8.

State-of-the-art in retinal optical coherence tomography image analysis.

Baghaie A, Yu Z, D'Souza RM.

Quant Imaging Med Surg. 2015 Aug;5(4):603-17. doi: 10.3978/j.issn.2223-4292.2015.07.02. Review.

9.

Recent advances in 3D SEM surface reconstruction.

Tafti AP, Kirkpatrick AB, Alavi Z, Owen HA, Yu Z.

Micron. 2015 Nov;78:54-66. doi: 10.1016/j.micron.2015.07.005. Epub 2015 Jul 28.

PMID:
26277082
10.

Electron tomography of cryo-immobilized plant tissue: a novel approach to studying 3D macromolecular architecture of mature plant cell walls in situ.

Sarkar P, Bosneaga E, Yap EG Jr, Das J, Tsai WT, Cabal A, Neuhaus E, Maji D, Kumar S, Joo M, Yakovlev S, Csencsits R, Yu Z, Bajaj C, Downing KH, Auer M.

PLoS One. 2014 Sep 10;9(9):e106928. doi: 10.1371/journal.pone.0106928. eCollection 2014.

11.

Skeleton-based shape analysis of protein models.

Li Z, Qin S, Yu Z, Jin Y.

J Mol Graph Model. 2014 Sep;53:72-81. doi: 10.1016/j.jmgm.2014.06.012. Epub 2014 Jul 12.

PMID:
25086274
12.

A Compact Shape Descriptor for Triangular Surface Meshes.

Gao Z, Yu Z, Pang X.

Comput Aided Des. 2014 Aug 1;53:62-69.

13.

New software developments for quality mesh generation and optimization from biomedical imaging data.

Yu Z, Wang J, Gao Z, Xu M, Hoshijima M.

Comput Methods Programs Biomed. 2014;113(1):226-40. doi: 10.1016/j.cmpb.2013.08.009. Epub 2013 Sep 4.

14.

Parallel acceleration for modeling of calcium dynamics in cardiac myocytes.

Liu K, Yao G, Yu Z.

Biomed Mater Eng. 2014;24(1):1417-24. doi: 10.3233/BME-130946.

15.

Numerical analysis of the effect of T-tubule location on calcium transient in ventricular myocytes.

George UZ, Wang J, Yu Z.

Biomed Mater Eng. 2014;24(1):1299-306. doi: 10.3233/BME-130932.

16.

Nanoscale distribution of ryanodine receptors and caveolin-3 in mouse ventricular myocytes: dilation of t-tubules near junctions.

Wong J, Baddeley D, Bushong EA, Yu Z, Ellisman MH, Hoshijima M, Soeller C.

Biophys J. 2013 Jun 4;104(11):L22-4. doi: 10.1016/j.bpj.2013.02.059.

17.
18.

Quality Tetrahedral Mesh Smoothing via Boundary-Optimized Delaunay Triangulation.

Gao Z, Yu Z, Holst M.

Comput Aided Geom Des. 2012 Dec 1;29(9):707-721. Epub 2012 Jul 13.

19.

Modelling cardiac calcium sparks in a three-dimensional reconstruction of a calcium release unit.

Hake J, Edwards AG, Yu Z, Kekenes-Huskey PM, Michailova AP, McCammon JA, Holst MJ, Hoshijima M, McCulloch AD.

J Physiol. 2012 Sep 15;590(18):4403-22. doi: 10.1113/jphysiol.2012.227926. Epub 2012 Apr 10.

20.

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