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Items: 1 to 20 of 28


Experimentally Validated Plant lncRNAs in EVLncRNAs Database.

Zhou B, Zhao H, Yu J, Guo C, Dou X, Song F, Hu G, Cao Z, Qu Y, Yang Y, Zhou Y, Wang J.

Methods Mol Biol. 2019;1933:431-437. doi: 10.1007/978-1-4939-9045-0_27.


Different effects of cholesterol on membrane permeation of arginine and tryptophan revealed by bias-exchange metadynamics simulations.

Cao Z, Zhang X, Wang C, Liu L, Zhao L, Wang J, Zhou Y.

J Chem Phys. 2019 Feb 28;150(8):084106. doi: 10.1063/1.5082351.


Atomistic Analysis of ToxN and ToxI Complex Unbinding Mechanism.

Hu G, Yu X, Bian Y, Cao Z, Xu S, Zhao L, Ji B, Wang W, Wang J.

Int J Mol Sci. 2018 Nov 9;19(11). pii: E3524. doi: 10.3390/ijms19113524.


Molecular Dynamics Simulations of Human Antimicrobial Peptide LL-37 in Model POPC and POPG Lipid Bilayers.

Zhao L, Cao Z, Bian Y, Hu G, Wang J, Zhou Y.

Int J Mol Sci. 2018 Apr 13;19(4). pii: E1186. doi: 10.3390/ijms19041186.


Fast-Folding Pathways of the Thrombin-Binding Aptamer G-Quadruplex Revealed by a Markov State Model.

Bian Y, Song F, Cao Z, Zhao L, Yu J, Guo X, Wang J.

Biophys J. 2018 Apr 10;114(7):1529-1538. doi: 10.1016/j.bpj.2018.02.021.


Bias-Exchange Metadynamics Simulation of Membrane Permeation of 20 Amino Acids.

Cao Z, Bian Y, Hu G, Zhao L, Kong Z, Yang Y, Wang J, Zhou Y.

Int J Mol Sci. 2018 Mar 16;19(3). pii: E885. doi: 10.3390/ijms19030885.


EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments.

Zhou B, Zhao H, Yu J, Guo C, Dou X, Song F, Hu G, Cao Z, Qu Y, Yang Y, Zhou Y, Wang J.

Nucleic Acids Res. 2018 Jan 4;46(D1):D100-D105. doi: 10.1093/nar/gkx677.


Natural protein sequences are more intrinsically disordered than random sequences.

Yu JF, Cao Z, Yang Y, Wang CL, Su ZD, Zhao YW, Wang JH, Zhou Y.

Cell Mol Life Sci. 2016 Aug;73(15):2949-57. doi: 10.1007/s00018-016-2138-9. Epub 2016 Jan 22.


Revealing the binding modes and the unbinding of 14-3-3σ proteins and inhibitors by computational methods.

Hu G, Cao Z, Xu S, Wang W, Wang J.

Sci Rep. 2015 Nov 16;5:16481. doi: 10.1038/srep16481.


Effect of pH on the Aggregation of α-syn12 Dimer in Explicit Water by Replica-Exchange Molecular Dynamics Simulation.

Cao Z, Zhang X, Liu L, Zhao L, Li H, Wang J.

Int J Mol Sci. 2015 Jun 24;16(7):14291-304. doi: 10.3390/ijms160714291.


Conformational stability of PCID2 upon DSS1 binding with molecular dynamics simulation.

Liu Q, Hu G, Cao Z, Wang J, Chen H.

J Mol Model. 2015 May;21(5):127. doi: 10.1007/s00894-015-2664-7. Epub 2015 Apr 26.


The role of semidisorder in temperature adaptation of bacterial FlgM proteins.

Wang J, Yang Y, Cao Z, Li Z, Zhao H, Zhou Y.

Biophys J. 2013 Dec 3;105(11):2598-605. doi: 10.1016/j.bpj.2013.10.026.


Deepening constantly understanding of protein folding problem.

Wang J, Yu J, Zhao L, Hu G, Cao Z.

J Biomol Struct Dyn. 2013;31(9):956-60. doi: 10.1080/07391102.2012.748527. Epub 2013 Feb 5. No abstract available.


Comparison of the structural characteristics of Cu(2+)-bound and unbound α-syn12 peptide obtained in simulations using different force fields.

Cao Z, Liu L, Zhao L, Li H, Wang J.

J Mol Model. 2013 Mar;19(3):1237-50. doi: 10.1007/s00894-012-1664-0. Epub 2012 Nov 18.


The effect of C-terminal helix on the stability of FF domain studied by molecular dynamics simulation.

Zhao L, Cao Z, Wang J.

Int J Mol Sci. 2012;13(2):1720-32. doi: 10.3390/ijms13021720. Epub 2012 Feb 7.


Effects of different force fields and temperatures on the structural character of Abeta (12-28) peptide in aqueous solution.

Cao Z, Liu L, Zhao L, Wang J.

Int J Mol Sci. 2011;12(11):8259-74. doi: 10.3390/ijms12118259. Epub 2011 Nov 21.


Novel strategies for drug discovery based on Intrinsically Disordered Proteins (IDPs).

Wang J, Cao Z, Zhao L, Li S.

Int J Mol Sci. 2011;12(5):3205-19. doi: 10.3390/ijms12053205. Epub 2011 May 17. Review.


Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.

Cao Z, Liu L, Wu P, Wang J.

Acta Biochim Biophys Sin (Shanghai). 2011 Mar;43(3):172-80. doi: 10.1093/abbs/gmr002. Epub 2011 Feb 2. Erratum in: Acta Biochim Biophys Sin (Shanghai). 2011 Apr;43(4):335.


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