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Items: 1 to 20 of 121


FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes.

Zhang SY, Zhang SW, Fan XN, Zhang T, Meng J, Huang Y.

Bioinformatics. 2019 Jul 15;35(14):i90-i98. doi: 10.1093/bioinformatics/btz316.


Seasonal exploration of ultrastructure and Na+/K+-ATPase, Na+/K+/2Cl- cotransporter of mitochondria-rich cells in the small intestine of turtles.

Vistro WA, Tarique I, Haseeb A, Yang P, Huang Y, Chen H, Bai X, Fazlani SA, Chen Q.

Micron. 2019 Aug 29;126:102747. doi: 10.1016/j.micron.2019.102747. [Epub ahead of print]


Correction to: Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

Chiu YC, Chen HH, Zhang T, Zhang S, Gorthi A, Wang LJ, Huang Y, Chen Y.

BMC Med Genomics. 2019 Aug 12;12(1):119. doi: 10.1186/s12920-019-0569-5.


Characterization of multilamellar bodies and telocytes within the testicular interstitium of naked mole rat Heterocephalus glabe.

Haseeb A, Tarique I, Iqbal A, Gandahi NS, Ali Vistro W, Bai X, Liang Y, Huang Y, Chen H, Chen Q, Yang P.

Theriogenology. 2019 Oct 15;138:111-120. doi: 10.1016/j.theriogenology.2019.07.010. Epub 2019 Jul 10.


The Postembryonic Development of the Immunological Barrier in the Chicken Spleens.

Zhang Q, Sun X, Wang T, Chen B, Huang Y, Chen H, Chen Q.

J Immunol Res. 2019 May 5;2019:6279360. doi: 10.1155/2019/6279360. eCollection 2019.


CRISPR-Cas9 Screening of Kaposi's Sarcoma-Associated Herpesvirus-Transformed Cells Identifies XPO1 as a Vulnerable Target of Cancer Cells.

Gruffaz M, Yuan H, Meng W, Liu H, Bae S, Kim JS, Lu C, Huang Y, Gao SJ.

MBio. 2019 May 14;10(3). pii: e00866-19. doi: 10.1128/mBio.00866-19.


Apoptotic-like changes in epididymal spermatozoa of soft-shelled turtles, Pelodiscus sinensis, during long-term storage at 4 ºC.

Chen H, Huang Y, Bai X, Yang P, Tarique I, Vistro WA, Gandahi NS, Fazlani SA, Chen Q.

Anim Reprod Sci. 2019 Jun;205:134-143. doi: 10.1016/j.anireprosci.2019.04.014. Epub 2019 May 1.


DRUM: Inference of Disease-Associated m6A RNA Methylation Sites From a Multi-Layer Heterogeneous Network.

Tang Y, Chen K, Wu X, Wei Z, Zhang SY, Song B, Zhang SW, Huang Y, Meng J.

Front Genet. 2019 Apr 3;10:266. doi: 10.3389/fgene.2019.00266. eCollection 2019.


miR-629-5p promotes growth and metastasis of hepatocellular carcinoma by activating β-catenin.

Tao X, Yang X, Wu K, Yang L, Huang Y, Jin Q, Chen S.

Exp Cell Res. 2019 Jul 15;380(2):124-130. doi: 10.1016/j.yexcr.2019.03.042. Epub 2019 Apr 4.


Inhibition of autophagy impairs acrosome and mitochondrial crista formation during spermiogenesis in turtle: Ultrastructural evidence.

Haseeb A, Tarique I, Bai X, Yang P, Ali Vistro W, Huang Y, Ali Fazllani S, Ahmed Z, Chen Q.

Micron. 2019 Jun;121:84-89. doi: 10.1016/j.micron.2019.03.006. Epub 2019 Apr 1.


Hepatic lipid droplet breakdown through lipolysis during hibernation in Chinese Soft-Shelled Turtle (Pelodiscus sinensis).

Huang Y, Chen H, Yang P, Bai X, Shi Y, Vistro WA, Tarique I, Haseeb A, Chen Q.

Aging (Albany NY). 2019 Mar 29;11(7):1990-2002. doi: 10.18632/aging.101887.


In vivo multivesicular bodies and their exosomes in the absorptive cells of the zebrafish (Danio Rerio) gut.

Bai X, Guo Y, Shi Y, Lin J, Tarique I, Wang X, Vistro WA, Huang Y, Chen H, Haseeb A, Yang P, Chen Q.

Fish Shellfish Immunol. 2019 May;88:578-586. doi: 10.1016/j.fsi.2019.03.030. Epub 2019 Mar 15.


LIPOPHAGY: a novel form of steroidogenic activity within the LEYDIG cell during the reproductive cycle of turtle.

Tarique I, Vistro WA, Bai X, Yang P, Hong C, Huang Y, Haseeb A, Liu E, Gandahi NS, Xu M, Liu Y, Chen Q.

Reprod Biol Endocrinol. 2019 Feb 9;17(1):19. doi: 10.1186/s12958-019-0462-2.


Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

Chiu YC, Chen HH, Zhang T, Zhang S, Gorthi A, Wang LJ, Huang Y, Chen Y.

BMC Med Genomics. 2019 Jan 31;12(Suppl 1):18. doi: 10.1186/s12920-018-0460-9. Erratum in: BMC Med Genomics. 2019 Aug 12;12(1):119.


Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods.

Zhang SY, Zhang SW, Fan XN, Meng J, Chen Y, Gao SJ, Huang Y.

PLoS Comput Biol. 2019 Jan 2;15(1):e1006663. doi: 10.1371/journal.pcbi.1006663. eCollection 2019 Jan.


GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization.

Chen HH, Chiu YC, Zhang T, Zhang S, Huang Y, Chen Y.

BMC Syst Biol. 2018 Dec 21;12(Suppl 8):142. doi: 10.1186/s12918-018-0642-2.


Lipophagy contributes to long-term storage of spermatozoa in the epididymis of the Chinese soft-shelled turtle Pelodiscus sinensis.

Chen H, Huang Y, Yang P, Liu T, Ahmed N, Wang L, Wang T, Bai X, Haseeb A, Chen Q.

Reprod Fertil Dev. 2019 Apr;31(4):774-786. doi: 10.1071/RD18307.


Deep-2'-O-Me: Predicting 2'-O-methylation sites by Convolutional Neural Networks.

Mostavi M, Salekin S, Huang Y.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:2394-2397. doi: 10.1109/EMBC.2018.8512780.


Cross-talk among writers, readers, and erasers of m6A regulates cancer growth and progression.

Panneerdoss S, Eedunuri VK, Yadav P, Timilsina S, Rajamanickam S, Viswanadhapalli S, Abdelfattah N, Onyeagucha BC, Cui X, Lai Z, Mohammad TA, Gupta YK, Huang TH, Huang Y, Chen Y, Rao MK.

Sci Adv. 2018 Oct 3;4(10):eaar8263. doi: 10.1126/sciadv.aar8263. eCollection 2018 Oct.


Topological Characterization of Human and Mouse m5C Epitranscriptome Revealed by Bisulfite Sequencing.

Wei Z, Panneerdoss S, Timilsina S, Zhu J, Mohammad TA, Lu ZL, de Magalhães JP, Chen Y, Rong R, Huang Y, Rao MK, Meng J.

Int J Genomics. 2018 Jun 13;2018:1351964. doi: 10.1155/2018/1351964. eCollection 2018.

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