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Items: 1 to 20 of 85

1.

Predicting the change of exon splicing caused by genetic variant using support vector regression.

Chen K, Lu Y, Zhao H, Yang Y.

Hum Mutat. 2019 May 9. doi: 10.1002/humu.23785. [Epub ahead of print]

PMID:
31070294
2.

Experimentally Validated Plant lncRNAs in EVLncRNAs Database.

Zhou B, Zhao H, Yu J, Guo C, Dou X, Song F, Hu G, Cao Z, Qu Y, Yang Y, Zhou Y, Wang J.

Methods Mol Biol. 2019;1933:431-437. doi: 10.1007/978-1-4939-9045-0_27.

PMID:
30945202
3.

SPOT-Peptide: Template-Based Prediction of Peptide-Binding Proteins and Peptide-Binding Sites.

Litfin T, Yang Y, Zhou Y.

J Chem Inf Model. 2019 Feb 25;59(2):924-930. doi: 10.1021/acs.jcim.8b00777. Epub 2019 Feb 14.

PMID:
30698427
4.

Identifying Structure-Property Relationships through SMILES Syntax Analysis with Self-Attention Mechanism.

Zheng S, Yan X, Yang Y, Xu J.

J Chem Inf Model. 2019 Feb 25;59(2):914-923. doi: 10.1021/acs.jcim.8b00803. Epub 2019 Feb 6.

PMID:
30669836
5.

QBMG: quasi-biogenic molecule generator with deep recurrent neural network.

Zheng S, Yan X, Gu Q, Yang Y, Du Y, Lu Y, Xu J.

J Cheminform. 2019 Jan 17;11(1):5. doi: 10.1186/s13321-019-0328-9.

6.
7.

Single-sequence-based prediction of protein secondary structures and solvent accessibility by deep whole-sequence learning.

Heffernan R, Paliwal K, Lyons J, Singh J, Yang Y, Zhou Y.

J Comput Chem. 2018 Oct 5;39(26):2210-2216. doi: 10.1002/jcc.25534. Epub 2018 Oct 14.

PMID:
30368831
8.

Self-derived structure-disrupting peptides targeting methionine aminopeptidase in pathogenic bacteria: a new strategy to generate antimicrobial peptides.

Zhan J, Jia H, Semchenko EA, Bian Y, Zhou AM, Li Z, Yang Y, Wang J, Sarkar S, Totsika M, Blanchard H, Jen FE, Ye Q, Haselhorst T, Jennings MP, Seib KL, Zhou Y.

FASEB J. 2019 Feb;33(2):2095-2104. doi: 10.1096/fj.201700613RR. Epub 2018 Sep 27.

PMID:
30260702
9.

YesU from Bacillus subtilis preferentially binds fucosylated glycans.

Tiralongo J, Cooper O, Litfin T, Yang Y, King R, Zhan J, Zhao H, Bovin N, Day CJ, Zhou Y.

Sci Rep. 2018 Sep 3;8(1):13139. doi: 10.1038/s41598-018-31241-8.

10.

Detecting Proline and Non-Proline Cis Isomers in Protein Structures from Sequences Using Deep Residual Ensemble Learning.

Singh J, Hanson J, Heffernan R, Paliwal K, Yang Y, Zhou Y.

J Chem Inf Model. 2018 Sep 24;58(9):2033-2042. doi: 10.1021/acs.jcim.8b00442. Epub 2018 Aug 29.

PMID:
30118602
11.

Computational Prediction of Carbohydrate-Binding Proteins and Binding Sites.

Zhao H, Taherzadeh G, Zhou Y, Yang Y.

Curr Protoc Protein Sci. 2018 Nov;94(1):e75. doi: 10.1002/cpps.75. Epub 2018 Aug 14. Review.

PMID:
30106511
12.

Accurate prediction of protein contact maps by coupling residual two-dimensional bidirectional long short-term memory with convolutional neural networks.

Hanson J, Paliwal K, Litfin T, Yang Y, Zhou Y.

Bioinformatics. 2018 Dec 1;34(23):4039-4045. doi: 10.1093/bioinformatics/bty481.

PMID:
29931279
13.

Predicting lysine-malonylation sites of proteins using sequence and predicted structural features.

Taherzadeh G, Yang Y, Xu H, Xue Y, Liew AW, Zhou Y.

J Comput Chem. 2018 Aug 15;39(22):1757-1763. doi: 10.1002/jcc.25353. Epub 2018 May 14.

PMID:
29761520
14.

A survey of Type III restriction-modification systems reveals numerous, novel epigenetic regulators controlling phase-variable regulons; phasevarions.

Atack JM, Yang Y, Seib KL, Zhou Y, Jennings MP.

Nucleic Acids Res. 2018 Apr 20;46(7):3532-3542. doi: 10.1093/nar/gky192.

15.

Bias-Exchange Metadynamics Simulation of Membrane Permeation of 20 Amino Acids.

Cao Z, Bian Y, Hu G, Zhao L, Kong Z, Yang Y, Wang J, Zhou Y.

Int J Mol Sci. 2018 Mar 16;19(3). pii: E885. doi: 10.3390/ijms19030885.

16.

SPIN2: Predicting sequence profiles from protein structures using deep neural networks.

O'Connell J, Li Z, Hanson J, Heffernan R, Lyons J, Paliwal K, Dehzangi A, Yang Y, Zhou Y.

Proteins. 2018 Jun;86(6):629-633. doi: 10.1002/prot.25489. Epub 2018 Mar 25.

PMID:
29508448
18.

Transcriptome profiling of lentil (Lens culinaris) through the first 24 hours of Ascochyta lentis infection reveals key defence response genes.

Khorramdelazad M, Bar I, Whatmore P, Smetham G, Bhaaskaria V, Yang Y, Bai SH, Mantri N, Zhou Y, Ford R.

BMC Genomics. 2018 Jan 31;19(1):108. doi: 10.1186/s12864-018-4488-1.

19.

B-factor profile prediction for RNA flexibility using support vector machines.

Guruge I, Taherzadeh G, Zhan J, Zhou Y, Yang Y.

J Comput Chem. 2018 Mar 30;39(8):407-411. doi: 10.1002/jcc.25124. Epub 2017 Nov 21.

PMID:
29164646
20.

JAK2-binding long noncoding RNA promotes breast cancer brain metastasis.

Wang S, Liang K, Hu Q, Li P, Song J, Yang Y, Yao J, Mangala LS, Li C, Yang W, Park PK, Hawke DH, Zhou J, Zhou Y, Xia W, Hung MC, Marks JR, Gallick GE, Lopez-Berestein G, Flores ER, Sood AK, Huang S, Yu D, Yang L, Lin C.

J Clin Invest. 2017 Dec 1;127(12):4498-4515. doi: 10.1172/JCI91553. Epub 2017 Nov 13.

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