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Items: 1 to 20 of 49


An improved scoring method for the identification of endogenous peptides based on the Mascot MS/MS ion search.

Chen YL, Chang WH, Lee CY, Chen YR.

Analyst. 2019 Apr 23;144(9):3045-3055. doi: 10.1039/c8an02141d.


Application of Data-Independent Acquisition Approach to Study the Proteome Change from Early to Later Phases of Tomato Pathogenesis Responses.

Fan KT, Wang KH, Chang WH, Yang JC, Yeh CF, Cheng KT, Hung SC, Chen YR.

Int J Mol Sci. 2019 Feb 17;20(4). pii: E863. doi: 10.3390/ijms20040863.


Phyto-sesquiterpene lactone deoxyelephantopin and cisplatin synergistically suppress lung metastasis of B16 melanoma in mice with reduced nephrotoxicity.

Chao WW, Cheng YW, Chen YR, Lee SH, Chiou CY, Shyur LF.

Phytomedicine. 2019 Mar 15;56:194-206. doi: 10.1016/j.phymed.2018.11.005. Epub 2018 Nov 6.


Multiple model species selection for transcriptomics analysis of non-model organisms.

Pai TW, Li KH, Yang CH, Hu CH, Lin HJ, Wang WD, Chen YR.

BMC Bioinformatics. 2018 Aug 13;19(Suppl 9):284. doi: 10.1186/s12859-018-2278-z.


Streamlined generation of plant virus infectious clones using the pLX mini binary vectors.

Pasin F, Tseng XA, Bedoya LC, Heydarnejad J, Deng TC, GarcĂ­a JA, Chen YR.

J Virol Methods. 2018 Dec;262:48-55. doi: 10.1016/j.jviromet.2018.09.007. Epub 2018 Sep 17.


Correction: Immunogenicity of mammary tumor cells can be induced by shikonin via direct binding-interference with hnRNPA1.

Yin SY, Efferth T, Jian FY, Chen YH, Liu CI, Wang AHJ, Chen YR, Hsiao PW, Yang NS.

Oncotarget. 2018 Aug 14;9(63):32271. doi: 10.18632/oncotarget.26007. eCollection 2018 Aug 14.


Functional enrichment analysis based on long noncoding RNA associations.

Hung KS, Hsiao CC, Pai TW, Hu CH, Tzou WS, Wang WD, Chen YR.

BMC Syst Biol. 2018 Apr 24;12(Suppl 4):45. doi: 10.1186/s12918-018-0571-0.


DNA Modulates the Interaction of Genetically Engineered DNA-Binding Proteins and Gold Nanoparticles: Diagnosis of High-Risk HPV Infection.

Mao JY, Li HW, Wei SC, Harroun SG, Lee MY, Lin HY, Chung CY, Hsu CH, Chen YR, Lin HJ, Huang CC.

ACS Appl Mater Interfaces. 2017 Dec 27;9(51):44307-44315. doi: 10.1021/acsami.7b13873. Epub 2017 Dec 18.


Fenugreek Compound (N55) Lowers Plasma Glucose through the Enhancement of Response of Physiological Glucagon-like peptide-1.

Chou IW, Cheng YH, Chen YR, Hsieh PC, King K.

Sci Rep. 2017 Sep 25;7(1):12265. doi: 10.1038/s41598-017-12290-x.


SEPT12 phosphorylation results in loss of the septin ring/sperm annulus, defective sperm motility and poor male fertility.

Shen YR, Wang HY, Kuo YC, Shih SC, Hsu CH, Chen YR, Wu SR, Wang CY, Kuo PL.

PLoS Genet. 2017 Mar 27;13(3):e1006631. doi: 10.1371/journal.pgen.1006631. eCollection 2017 Mar.


Inhibiting MDSC differentiation from bone marrow with phytochemical polyacetylenes drastically impairs tumor metastasis.

Wei WC, Lin SY, Lan CW, Huang YC, Lin CY, Hsiao PW, Chen YR, Yang WC, Yang NS.

Sci Rep. 2016 Nov 18;6:36663. doi: 10.1038/srep36663.


Urinary exposure marker discovery for toxicants using ultra-high pressure liquid chromatography coupled with Orbitrap high resolution mass spectrometry and three untargeted metabolomics approaches.

Hsu JY, Hsu JF, Chen YR, Shih CL, Hsu YS, Chen YJ, Tsai SH, Liao PC.

Anal Chim Acta. 2016 Oct 5;939:73-83. doi: 10.1016/j.aca.2016.07.032. Epub 2016 Jul 28.


Metabolic labelling of cholesteryl glucosides in Helicobacter pylori reveals how the uptake of human lipids enhances bacterial virulence.

Jan HM, Chen YC, Shih YY, Huang YC, Tu Z, Ingle AB, Liu SW, Wu MS, Gervay-Hague J, Mong KT, Chen YR, Lin CH.

Chem Sci. 2016 Sep 1;7(9):6208-6216. doi: 10.1039/c6sc00889e. Epub 2016 Jun 3.


Immunogenicity of mammary tumor cells can be induced by shikonin via direct binding-interference with hnRNPA1.

Yin SY, Efferth T, Jian FY, Chen YH, Liu CI, Wang AH, Chen YR, Hsiao PW, Yang NS.

Oncotarget. 2016 Jul 12;7(28):43629-43653. doi: 10.18632/oncotarget.9660. Erratum in: Oncotarget. 2018 Aug 14;9(63):32271.


Identification of metal species by ESI-MS/MS through release of free metals from the corresponding metal-ligand complexes.

Tsednee M, Huang YC, Chen YR, Yeh KC.

Sci Rep. 2016 May 31;6:26785. doi: 10.1038/srep26785.


Streamlined Membrane Proteome Preparation for Shotgun Proteomics Analysis with Triton X-100 Cloud Point Extraction and Nanodiamond Solid Phase Extraction.

Pham MD, Wen TC, Li HC, Hsieh PH, Chen YR, Chang HC, Han CC.

Materials (Basel). 2016 May 18;9(5). pii: E385. doi: 10.3390/ma9050385.


Delineation of G-Quadruplex Alkylation Sites Mediated by 3,6-Bis(1-methyl-4-vinylpyridinium iodide)carbazole-Aniline Mustard Conjugates.

Chen CH, Hu TH, Huang TC, Chen YL, Chen YR, Cheng CC, Chen CT.

Chemistry. 2015 Nov 23;21(48):17379-90. doi: 10.1002/chem.201502595. Epub 2015 Oct 13.


Multiplex Brain Proteomic Analysis Revealed the Molecular Therapeutic Effects of Buyang Huanwu Decoction on Cerebral Ischemic Stroke Mice.

Chen HJ, Shen YC, Shiao YJ, Liou KT, Hsu WH, Hsieh PH, Lee CY, Chen YR, Lin YL.

PLoS One. 2015 Oct 22;10(10):e0140823. doi: 10.1371/journal.pone.0140823. eCollection 2015.


Nonorthogonal tRNA(cys)(Amber) for protein and nascent chain labeling.

Koubek J, Chen YR, Cheng RP, Huang JJ.

RNA. 2015 Sep;21(9):1672-82. doi: 10.1261/rna.051805.115. Epub 2015 Jul 20.


A salt-regulated peptide derived from the CAP superfamily protein negatively regulates salt-stress tolerance in Arabidopsis.

Chien PS, Nam HG, Chen YR.

J Exp Bot. 2015 Aug;66(17):5301-13. doi: 10.1093/jxb/erv263. Epub 2015 Jun 20.

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