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Items: 8

1.

Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq Data.

Zhong X, Pla A, Rayner S.

Bioinformatics. 2019 Nov 4. pii: btz806. doi: 10.1093/bioinformatics/btz806. [Epub ahead of print]

PMID:
31681943
2.

Accurate Adapter Information Is Crucial for Reproducibility and Reusability in Small RNA Seq Studies.

Zhong X, Heinicke F, Lie BA, Rayner S.

Noncoding RNA. 2019 Oct 28;5(4). pii: E49. doi: 10.3390/ncrna5040049.

3.

Systematic assessment of commercially available low-input miRNA library preparation kits.

Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Farmer A, Henderson JM, Hussong MA, Moll P, Nguyen L, McNulty A, Shaffer JM, Shore S, Yip HK, Vitkovska J, Rayner S, Lie BA, Gilfillan GD.

RNA Biol. 2019 Sep 27:1-12. doi: 10.1080/15476286.2019.1667741. [Epub ahead of print]

PMID:
31559901
4.

miRBaseMiner, a tool for investigating miRBase content.

Zhong X, Heinicke F, Rayner S.

RNA Biol. 2019 Nov;16(11):1534-1546. doi: 10.1080/15476286.2019.1637680. Epub 2019 Aug 12.

5.

miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts.

Pla A, Zhong X, Rayner S.

PLoS Comput Biol. 2018 Jul 13;14(7):e1006185. doi: 10.1371/journal.pcbi.1006185. eCollection 2018 Jul.

6.

Found in translation: functions and evolution of a recently discovered alternative proteome.

Landry CR, Zhong X, Nielly-Thibault L, Roucou X.

Curr Opin Struct Biol. 2015 Jun;32:74-80. doi: 10.1016/j.sbi.2015.02.017. Epub 2015 Mar 18. Review.

PMID:
25795211
7.

Comparison of complete genome sequences of dog rabies viruses isolated from China and Mexico reveals key amino acid changes that may be associated with virus replication and virulence.

Yu F, Zhang G, Zhong X, Han N, Song Y, Zhao L, Cui M, Rayner S, Fu ZF.

Arch Virol. 2014 Jul;159(7):1593-601. doi: 10.1007/s00705-013-1966-2. Epub 2014 Jan 7.

PMID:
24395077
8.

Genetic characterization and transmitted drug resistance of the HIV type 1 epidemic in men who have sex with men in Beijing, China.

Li L, Han N, Lu J, Li T, Zhong X, Wu H, Rayner S, Chen L, Liu Y, Wang X, Li H, Li J.

AIDS Res Hum Retroviruses. 2013 Mar;29(3):633-7. doi: 10.1089/AID.2012.0281. Epub 2013 Jan 28.

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