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Items: 1 to 20 of 109

1.

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.

Grüning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R.

Nucleic Acids Res. 2017 Jun 5. doi: 10.1093/nar/gkx409. [Epub ahead of print]

PMID:
28582575
2.

Acclimation of Oxygenic Photosynthesis to Iron Starvation Is Controlled by the sRNA IsaR1.

Georg J, Kostova G, Vuorijoki L, Schön V, Kadowaki T, Huokko T, Baumgartner D, Müller M, Klähn S, Allahverdiyeva Y, Hihara Y, Futschik ME, Aro EM, Hess WR.

Curr Biol. 2017 May 22;27(10):1425-1436.e7. doi: 10.1016/j.cub.2017.04.010. Epub 2017 May 4.

PMID:
28479323
3.

Draft Genome Sequences of Nine Cyanobacterial Strains from Diverse Habitats.

Zhu T, Hou S, Lu X, Hess WR.

Genome Announc. 2017 Mar 2;5(9). pii: e01676-16. doi: 10.1128/genomeA.01676-16.

4.

Genome of a giant bacteriophage from a decaying Trichodesmium bloom.

Pfreundt U, Spungin D, Hou S, Voß B, Berman-Frank I, Hess WR.

Mar Genomics. 2017 Jun;33:21-25. doi: 10.1016/j.margen.2017.02.001. Epub 2017 Feb 22.

PMID:
28237778
5.

The Ssl2245-Sll1130 Toxin-Antitoxin System Mediates Heat-induced Programmed Cell Death in Synechocystis sp. PCC6803.

Srikumar A, Krishna PS, Sivaramakrishna D, Kopfmann S, Hess WR, Swamy MJ, Lin-Chao S, Prakash JS.

J Biol Chem. 2017 Mar 10;292(10):4222-4234. doi: 10.1074/jbc.M116.748178. Epub 2017 Jan 19.

PMID:
28104802
6.

Microbial metatranscriptomes from the thermally stratified Gulf of Aqaba/Eilat during summer.

Miller DR, Pfreundt U, Elifantz H, Hess WR, Berman-Frank I.

Mar Genomics. 2017 Apr;32:23-26. doi: 10.1016/j.margen.2016.12.001. Epub 2016 Dec 20.

PMID:
28007524
7.

Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome.

Baumgartner D, Kopf M, Klähn S, Steglich C, Hess WR.

BMC Microbiol. 2016 Nov 28;16(1):285.

8.

Trimethylated homoserine functions as the major compatible solute in the globally significant oceanic cyanobacterium Trichodesmium.

Pade N, Michalik D, Ruth W, Belkin N, Hess WR, Berman-Frank I, Hagemann M.

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13191-13196. Epub 2016 Oct 31.

9.

mdRNA-Seq analysis of marine microbial communities from the northern Red Sea.

Hou S, Pfreundt U, Miller D, Berman-Frank I, Hess WR.

Sci Rep. 2016 Oct 19;6:35470. doi: 10.1038/srep35470.

10.

Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program.

Klotz A, Georg J, Bučinská L, Watanabe S, Reimann V, Januszewski W, Sobotka R, Jendrossek D, Hess WR, Forchhammer K.

Curr Biol. 2016 Nov 7;26(21):2862-2872. doi: 10.1016/j.cub.2016.08.054. Epub 2016 Oct 6.

PMID:
27720620
11.

CyAbrB2 Contributes to the Transcriptional Regulation of Low CO2 Acclimation in Synechocystis sp. PCC 6803.

Orf I, Schwarz D, Kaplan A, Kopka J, Hess WR, Hagemann M, Klähn S.

Plant Cell Physiol. 2016 Oct;57(10):2232-2243. Epub 2016 Sep 16.

PMID:
27638927
12.

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs.

Reimann V, Alkhnbashi OS, Saunders SJ, Scholz I, Hein S, Backofen R, Hess WR.

Nucleic Acids Res. 2017 Jan 25;45(2):915-925. doi: 10.1093/nar/gkw786. Epub 2016 Sep 5.

PMID:
27599840
13.

Type II Toxin-Antitoxin Systems in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803.

Kopfmann S, Roesch SK, Hess WR.

Toxins (Basel). 2016 Jul 21;8(7). pii: E228. doi: 10.3390/toxins8070228.

14.

The Non-Coding RNA Ncr0700/PmgR1 is Required for Photomixotrophic Growth and the Regulation of Glycogen Accumulation in the Cyanobacterium Synechocystis sp. PCC 6803.

de Porcellinis AJ, Klähn S, Rosgaard L, Kirsch R, Gutekunst K, Georg J, Hess WR, Sakuragi Y.

Plant Cell Physiol. 2016 Oct;57(10):2091-2103. Epub 2016 Jul 20.

PMID:
27440548
15.

A tightly inducible riboswitch system in Synechocystis sp. PCC 6803.

Ohbayashi R, Akai H, Yoshikawa H, Hess WR, Watanabe S.

J Gen Appl Microbiol. 2016 Jul 14;62(3):154-9. doi: 10.2323/jgam.2016.02.002. Epub 2016 Jun 1.

16.

Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803.

Pade N, Erdmann S, Enke H, Dethloff F, Dühring U, Georg J, Wambutt J, Kopka J, Hess WR, Zimmermann R, Kramer D, Hagemann M.

Biotechnol Biofuels. 2016 Apr 18;9:89. doi: 10.1186/s13068-016-0503-4. eCollection 2016.

17.

A Feed-Forward Loop Consisting of the Response Regulator RpaB and the Small RNA PsrR1 Controls Light Acclimation of Photosystem I Gene Expression in the Cyanobacterium Synechocystis sp. PCC 6803.

Kadowaki T, Nagayama R, Georg J, Nishiyama Y, Wilde A, Hess WR, Hihara Y.

Plant Cell Physiol. 2016 Apr;57(4):813-23. doi: 10.1093/pcp/pcw028. Epub 2016 Feb 12.

PMID:
26872833
18.

Sequential splicing of a group II twintron in the marine cyanobacterium Trichodesmium.

Pfreundt U, Hess WR.

Sci Rep. 2015 Nov 18;5:16829. doi: 10.1038/srep16829.

19.

The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7.

Klähn S, Schaal C, Georg J, Baumgartner D, Knippen G, Hagemann M, Muro-Pastor AM, Hess WR.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):E6243-52. doi: 10.1073/pnas.1508412112. Epub 2015 Oct 22.

20.

Integrated Analysis of Engineered Carbon Limitation in a Quadruple CO2/HCO3- Uptake Mutant of Synechocystis sp. PCC 6803.

Orf I, Klähn S, Schwarz D, Frank M, Hess WR, Hagemann M, Kopka J.

Plant Physiol. 2015 Nov;169(3):1787-806. doi: 10.1104/pp.15.01289. Epub 2015 Sep 15.

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