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Items: 1 to 20 of 68

1.

Transposable elements significantly contributed to the core promoters in the human genome.

Kellner M, Makałowski W.

Sci China Life Sci. 2019 Apr;62(4):489-497. doi: 10.1007/s11427-018-9449-0. Epub 2019 Mar 19.

PMID:
30915629
2.

NanoPipe-a web server for nanopore MinION sequencing data analysis.

Shabardina V, Kischka T, Manske F, Grundmann N, Frith MC, Suzuki Y, Makałowski W.

Gigascience. 2019 Feb 1;8(2). pii: giy169. doi: 10.1093/gigascience/giy169.

3.

Life cycle adapted upstream open reading frames (uORFs) in Trypanosoma congolense: A post-transcriptional approach to accurate gene regulation.

Fervers P, Fervers F, Makałowski W, Jąkalski M.

PLoS One. 2018 Aug 9;13(8):e0201461. doi: 10.1371/journal.pone.0201461. eCollection 2018.

4.

Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum.

Yamagishi J, Natori A, Tolba MEM, Mongan AE, Sugimoto C, Katayama T, Kawashima S, Makalowski W, Maeda R, Eshita Y, Tuda J, Suzuki Y.

Genome Res. 2018 Aug;28(8):1253. doi: 10.1101/gr.240291.118. No abstract available.

5.

Mutational Intratumor Heterogeneity is a Complex and Early Event in the Development of Adult T-cell Leukemia/Lymphoma.

Farmanbar A, Firouzi S, Makałowski W, Kneller R, Iwanaga M, Utsunomiya A, Nakai K, Watanabe T.

Neoplasia. 2018 Sep;20(9):883-893. doi: 10.1016/j.neo.2018.07.001. Epub 2018 Jul 19.

6.

Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum.

Runtuwene LR, Tuda JSB, Mongan AE, Makalowski W, Frith MC, Imwong M, Srisutham S, Nguyen Thi LA, Tuan NN, Eshita Y, Maeda R, Yamagishi J, Suzuki Y.

Sci Rep. 2018 May 29;8(1):8286. doi: 10.1038/s41598-018-26334-3.

7.

Environmental adaptation of Acanthamoeba castellanii and Entamoeba histolytica at genome level as seen by comparative genomic analysis.

Shabardina V, Kischka T, Kmita H, Suzuki Y, Makałowski W.

Int J Biol Sci. 2018 Feb 12;14(3):306-320. doi: 10.7150/ijbs.23869. eCollection 2018.

8.

Loss-of-function uORF mutations in human malignancies.

Schulz J, Mah N, Neuenschwander M, Kischka T, Ratei R, Schlag PM, Castaños-Vélez E, Fichtner I, Tunn PU, Denkert C, Klaas O, Berdel WE, von Kries JP, Makalowski W, Andrade-Navarro MA, Leutz A, Wethmar K.

Sci Rep. 2018 Feb 5;8(1):2395. doi: 10.1038/s41598-018-19201-8.

9.

Transcriptional interference by small transcripts in proximal promoter regions.

Pande A, Brosius J, Makalowska I, Makalowski W, Raabe CA.

Nucleic Acids Res. 2018 Feb 16;46(3):1069-1088. doi: 10.1093/nar/gkx1242.

10.

The emerging picture of the mitochondrial protein import complexes of Amoebozoa supergroup.

Wojtkowska M, Buczek D, Suzuki Y, Shabardina V, Makałowski W, Kmita H.

BMC Genomics. 2017 Dec 29;18(1):997. doi: 10.1186/s12864-017-4383-1.

11.

Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer.

Suzuki A, Suzuki M, Mizushima-Sugano J, Frith MC, Makalowski W, Kohno T, Sugano S, Tsuchihara K, Suzuki Y.

DNA Res. 2017 Dec 1;24(6):585-596. doi: 10.1093/dnares/dsx027.

12.

Inferring clonal structure in HTLV-1-infected individuals: towards bridging the gap between analysis and visualization.

Farmanbar A, Firouzi S, Makałowski W, Iwanaga M, Uchimaru K, Utsunomiya A, Watanabe T, Nakai K.

Hum Genomics. 2017 Jul 11;11(1):15. doi: 10.1186/s40246-017-0112-8.

13.

Serotyping dengue virus with isothermal amplification and a portable sequencer.

Yamagishi J, Runtuwene LR, Hayashida K, Mongan AE, Thi LAN, Thuy LN, Nhat CN, Limkittikul K, Sirivichayakul C, Sathirapongsasuti N, Frith M, Makalowski W, Eshita Y, Sugano S, Suzuki Y.

Sci Rep. 2017 Jun 14;7(1):3510. doi: 10.1038/s41598-017-03734-5.

14.

Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii.

Jąkalski M, Takeshita K, Deblieck M, Koyanagi KO, Makałowska I, Watanabe H, Makałowski W.

Biol Direct. 2016 Aug 4;11:35. doi: 10.1186/s13062-016-0138-1.

15.

Conservation of the Exon-Intron Structure of Long Intergenic Non-Coding RNA Genes in Eutherian Mammals.

Chernikova D, Managadze D, Glazko GV, Makalowski W, Rogozin IB.

Life (Basel). 2016 Jul 15;6(3). pii: E27. doi: 10.3390/life6030027.

16.

Protein import complexes in the mitochondrial outer membrane of Amoebozoa representatives.

Buczek D, Wojtkowska M, Suzuki Y, Sonobe S, Nishigami Y, Antoniewicz M, Kmita H, Makałowski W.

BMC Genomics. 2016 Feb 6;17:99. doi: 10.1186/s12864-016-2402-2.

17.
18.

TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability.

Bahnassawy L, Perumal TM, Gonzalez-Cano L, Hillje AL, Taher L, Makalowski W, Suzuki Y, Fuellen G, del Sol A, Schwamborn JC.

Sci Rep. 2015 Aug 26;5:13456. doi: 10.1038/srep13456.

19.

Corrigendum: Retrophylogenomics Place Tarsiers on the Evolutionary Branch of Anthropoids.

Hartig G, Churakov G, Warren WC, Brosius J, Makałowski W, Schmitz J.

Sci Rep. 2015 Jul 28;5:12590. doi: 10.1038/srep12590. No abstract available.

20.

The TOM Complex of Amoebozoans: the Cases of the Amoeba Acanthamoeba castellanii and the Slime Mold Dictyostelium discoideum.

Wojtkowska M, Buczek D, Stobienia O, Karachitos A, Antoniewicz M, Slocinska M, Makałowski W, Kmita H.

Protist. 2015 Jul;166(3):349-62. doi: 10.1016/j.protis.2015.05.005. Epub 2015 May 28.

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