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Items: 1 to 20 of 25


Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia.

Chen N, Cai Y, Chen Q, Li R, Wang K, Huang Y, Hu S, Huang S, Zhang H, Zheng Z, Song W, Ma Z, Ma Y, Dang R, Zhang Z, Xu L, Jia Y, Liu S, Yue X, Deng W, Zhang X, Sun Z, Lan X, Han J, Chen H, Bradley DG, Jiang Y, Lei C.

Nat Commun. 2018 Jun 14;9(1):2337. doi: 10.1038/s41467-018-04737-0.


Genome-Wide Identification and Expression Analysis of the HD-Zip Gene Family in Wheat (Triticum aestivum L.).

Yue H, Shu D, Wang M, Xing G, Zhan H, Du X, Song W, Nie X.

Genes (Basel). 2018 Feb 1;9(2). pii: E70. doi: 10.3390/genes9020070.


Conservation analysis of long non-coding RNAs in plants.

Deng P, Liu S, Nie X, Weining S, Wu L.

Sci China Life Sci. 2018 Feb;61(2):190-198. doi: 10.1007/s11427-017-9174-9. Epub 2017 Oct 31.


Genome-Wide Identification and Analysis of MAPK and MAPKK Gene Families in Bread Wheat (Triticum aestivum L.).

Zhan H, Yue H, Zhao X, Wang M, Song W, Nie X.

Genes (Basel). 2017 Oct 20;8(10). pii: E284. doi: 10.3390/genes8100284.


Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides).

Feng K, Nie X, Cui L, Deng P, Wang M, Song W.

Genes (Basel). 2017 Jun 6;8(6). pii: E156. doi: 10.3390/genes8060156.


Identification and Analysis of RNA Editing Sites in the Chloroplast Transcripts of Aegilops tauschii L.

Wang M, Liu H, Ge L, Xing G, Wang M, Weining S, Nie X.

Genes (Basel). 2016 Dec 30;8(1). pii: E13. doi: 10.3390/genes8010013.


Genome-Wide Identification, Evolution, and Co-expression Network Analysis of Mitogen-Activated Protein Kinase Kinase Kinases in Brachypodium distachyon.

Feng K, Liu F, Zou J, Xing G, Deng P, Song W, Tong W, Nie X.

Front Plant Sci. 2016 Sep 16;7:1400. eCollection 2016.


Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution.

Deng P, Wang M, Feng K, Cui L, Tong W, Song W, Nie X.

Sci Rep. 2016 Aug 26;6:32224. doi: 10.1038/srep32224.


Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon.

Cui L, Feng K, Wang M, Wang M, Deng P, Song W, Nie X.

BMC Genomics. 2016 Aug 15;17(1):636. doi: 10.1186/s12864-016-2968-8.


De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development.

Yue H, Wang L, Liu H, Yue W, Du X, Song W, Nie X.

Front Plant Sci. 2016 Jul 21;7:1083. doi: 10.3389/fpls.2016.01083. eCollection 2016.


Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.).

Yue H, Wang M, Liu S, Du X, Song W, Nie X.

BMC Genomics. 2016 May 10;17:343. doi: 10.1186/s12864-016-2677-3.


Characterization of microRNAs and their targets in wild barley (Hordeum vulgare subsp. spontaneum) using deep sequencing.

Deng P, Bian J, Yue H, Feng K, Wang M, Du X, Weining S, Nie X.

Genome. 2016 May;59(5):339-48. doi: 10.1139/gen-2015-0224. Epub 2016 Mar 18.


TaCYP78A5 regulates seed size in wheat (Triticum aestivum).

Ma M, Zhao H, Li Z, Hu S, Song W, Liu X.

J Exp Bot. 2016 Mar;67(5):1397-410. doi: 10.1093/jxb/erv542. Epub 2015 Dec 27.


Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress.

Deng P, Wang L, Cui L, Feng K, Liu F, Du X, Tong W, Nie X, Ji W, Weining S.

PLoS One. 2015 Sep 15;10(9):e0137990. doi: 10.1371/journal.pone.0137990. eCollection 2015.


Expression of TaCYP78A3, a gene encoding cytochrome P450 CYP78A3 protein in wheat (Triticum aestivum L.), affects seed size.

Ma M, Wang Q, Li Z, Cheng H, Li Z, Liu X, Song W, Appels R, Zhao H.

Plant J. 2015 Jul;83(2):312-25. doi: 10.1111/tpj.12896.


Preparation of high molecular weight gDNA and bacterial artificial chromosome (BAC) libraries in plants.

Biradar SS, Nie X, Feng K, Weining S.

Methods Mol Biol. 2014;1099:41-63. doi: 10.1007/978-1-62703-715-0_6.


A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.


Dispersion and domestication shaped the genome of bread wheat.

Berkman PJ, Visendi P, Lee HC, Stiller J, Manoli S, Lorenc MT, Lai K, Batley J, Fleury D, Simková H, Kubaláková M, Weining S, Doležel J, Edwards D.

Plant Biotechnol J. 2013 Jun;11(5):564-71. doi: 10.1111/pbi.12044. Epub 2013 Jan 24.


Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology.

Nie X, Li B, Wang L, Liu P, Biradar SS, Li T, Dolezel J, Edwards D, Luo M, Weining S.

Am J Bot. 2012 Sep;99(9):e369-71. doi: 10.3732/ajb.1200077. Epub 2012 Aug 30.

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