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Items: 1 to 20 of 31

1.

Persistent Organic Pollutants in Food: Contamination Sources, Health Effects and Detection Methods.

Guo W, Pan B, Sakkiah S, Yavas G, Ge W, Zou W, Tong W, Hong H.

Int J Environ Res Public Health. 2019 Nov 8;16(22). pii: E4361. doi: 10.3390/ijerph16224361. Review.

2.

Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.

Pan B, Kusko R, Xiao W, Zheng Y, Liu Z, Xiao C, Sakkiah S, Guo W, Gong P, Zhang C, Ge W, Shi L, Tong W, Hong H.

BMC Bioinformatics. 2019 May 15;20(1):252. doi: 10.1186/s12859-019-2776-7.

3.

Similarities and differences between variants called with human reference genome HG19 or HG38.

Pan B, Kusko R, Xiao W, Zheng Y, Liu Z, Xiao C, Sakkiah S, Guo W, Gong P, Zhang C, Ge W, Shi L, Tong W, Hong H.

BMC Bioinformatics. 2019 Mar 14;20(Suppl 2):101. doi: 10.1186/s12859-019-2620-0. Erratum in: BMC Bioinformatics. 2019 May 15;20(1):252.

4.

Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA.

Wu L, Ingle T, Liu Z, Zhao-Wong A, Harris S, Thakkar S, Zhou G, Yang J, Xu J, Mehta D, Ge W, Tong W, Fang H.

BMC Bioinformatics. 2019 Mar 14;20(Suppl 2):97. doi: 10.1186/s12859-019-2628-5.

5.

Structural Changes Due to Antagonist Binding in Ligand Binding Pocket of Androgen Receptor Elucidated Through Molecular Dynamics Simulations.

Sakkiah S, Kusko R, Pan B, Guo W, Ge W, Tong W, Hong H.

Front Pharmacol. 2018 May 15;9:492. doi: 10.3389/fphar.2018.00492. eCollection 2018.

6.

Consensus Modeling for Prediction of Estrogenic Activity of Ingredients Commonly Used in Sunscreen Products.

Hong H, Rua D, Sakkiah S, Selvaraj C, Ge W, Tong W.

Int J Environ Res Public Health. 2016 Sep 29;13(10). pii: E958.

7.

Pathway Analysis Revealed Potential Diverse Health Impacts of Flavonoids that Bind Estrogen Receptors.

Ye H, Ng HW, Sakkiah S, Ge W, Perkins R, Tong W, Hong H.

Int J Environ Res Public Health. 2016 Mar 26;13(4):373. doi: 10.3390/ijerph13040373.

8.

A Rat α-Fetoprotein Binding Activity Prediction Model to Facilitate Assessment of the Endocrine Disruption Potential of Environmental Chemicals.

Hong H, Shen J, Ng HW, Sakkiah S, Ye H, Ge W, Gong P, Xiao W, Tong W.

Int J Environ Res Public Health. 2016 Mar 25;13(4):372. doi: 10.3390/ijerph13040372.

9.

Inhibition of bile salt transport by drugs associated with liver injury in primary hepatocytes from human, monkey, dog, rat, and mouse.

Zhang J, He K, Cai L, Chen YC, Yang Y, Shi Q, Woolf TF, Ge W, Guo L, Borlak J, Tong W.

Chem Biol Interact. 2016 Aug 5;255:45-54. doi: 10.1016/j.cbi.2016.03.019. Epub 2016 Mar 19.

10.

Applying network analysis and Nebula (neighbor-edges based and unbiased leverage algorithm) to ToxCast data.

Ye H, Luo H, Ng HW, Meehan J, Ge W, Tong W, Hong H.

Environ Int. 2016 Apr-May;89-90:81-92. doi: 10.1016/j.envint.2016.01.010. Epub 2016 Jan 28.

PMID:
26826365
11.

Comparing genetic variants detected in the 1000 genomes project with SNPs determined by the International HapMap Consortium.

Zhang W, Ng HW, Shu M, Luo H, Su Z, Ge W, Perkins R, Tong W, Hong H.

J Genet. 2015 Dec;94(4):731-40.

12.

Development and Validation of Decision Forest Model for Estrogen Receptor Binding Prediction of Chemicals Using Large Data Sets.

Ng HW, Doughty SW, Luo H, Ye H, Ge W, Tong W, Hong H.

Chem Res Toxicol. 2015 Dec 21;28(12):2343-51. doi: 10.1021/acs.chemrestox.5b00358. Epub 2015 Nov 12.

PMID:
26524122
13.

A heuristic approach to determine an appropriate number of topics in topic modeling.

Zhao W, Chen JJ, Perkins R, Liu Z, Ge W, Ding Y, Zou W.

BMC Bioinformatics. 2015;16 Suppl 13:S8. doi: 10.1186/1471-2105-16-S13-S8. Epub 2015 Sep 25.

14.

Estrogenic activity data extraction and in silico prediction show the endocrine disruption potential of bisphenol A replacement compounds.

Ng HW, Shu M, Luo H, Ye H, Ge W, Perkins R, Tong W, Hong H.

Chem Res Toxicol. 2015 Sep 21;28(9):1784-95. doi: 10.1021/acs.chemrestox.5b00243. Epub 2015 Sep 2.

PMID:
26308263
15.

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.

Su Z, Fang H, Hong H, Shi L, Zhang W, Zhang W, Zhang Y, Dong Z, Lancashire LJ, Bessarabova M, Yang X, Ning B, Gong B, Meehan J, Xu J, Ge W, Perkins R, Fischer M, Tong W.

Genome Biol. 2014 Dec 3;15(12):523. doi: 10.1186/s13059-014-0523-y.

16.

Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population.

Zhang W, Meehan J, Su Z, Ng HW, Shu M, Luo H, Ge W, Perkins R, Tong W, Hong H.

BMC Bioinformatics. 2014;15 Suppl 11:S6. doi: 10.1186/1471-2105-15-S11-S6. Epub 2014 Oct 21.

17.

Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists.

Ng HW, Zhang W, Shu M, Luo H, Ge W, Perkins R, Tong W, Hong H.

BMC Bioinformatics. 2014;15 Suppl 11:S4. doi: 10.1186/1471-2105-15-S11-S4. Epub 2014 Oct 21.

18.

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium.

SEQC/MAQC-III Consortium.

Nat Biotechnol. 2014 Sep;32(9):903-14. doi: 10.1038/nbt.2957. Epub 2014 Aug 24.

19.

EADB: an estrogenic activity database for assessing potential endocrine activity.

Shen J, Xu L, Fang H, Richard AM, Bray JD, Judson RS, Zhou G, Colatsky TJ, Aungst JL, Teng C, Harris SC, Ge W, Dai SY, Su Z, Jacobs AC, Harrouk W, Perkins R, Tong W, Hong H.

Toxicol Sci. 2013 Oct;135(2):277-91. doi: 10.1093/toxsci/kft164. Epub 2013 Jul 28.

PMID:
23897986
20.

A unifying ontology to integrate histological and clinical observations for drug-induced liver injury.

Wang Y, Lin Z, Liu Z, Harris S, Kelly R, Zhang J, Ge W, Chen M, Borlak J, Tong W.

Am J Pathol. 2013 Apr;182(4):1180-7. doi: 10.1016/j.ajpath.2012.12.033. Epub 2013 Feb 8.

PMID:
23395088

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