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Items: 1 to 20 of 225


Regulation of cytochrome P450 expression by microRNAs and long non coding RNAs: Epigenetic mechanisms in environmental toxicology and carcinogenesis.

Li D, Tolleson WH, Yu D, Chen S, Guo L, Xiao W, Tong W, Ning B.

J Environ Sci Health C Environ Carcinog Ecotoxicol Rev. 2019 Jul 15:1-35. doi: 10.1080/10590501.2019.1639481. [Epub ahead of print]


QuaPra: Efficient transcript assembly and quantification using quadratic programming with Apriori algorithm.

Ji X, Tong W, Ning B, Mason CE, Kreil DP, Labaj PP, Chen G, Shi T.

Sci China Life Sci. 2019 Jul;62(7):937-946. doi: 10.1007/s11427-018-9433-3. Epub 2019 May 22.


Sequencing XMET genes to promote genotype-guided risk assessment and precision medicine.

Jin Y, Chen G, Xiao W, Hong H, Xu J, Guo Y, Xiao W, Shi T, Shi L, Tong W, Ning B.

Sci China Life Sci. 2019 Jul;62(7):895-904. doi: 10.1007/s11427-018-9479-5. Epub 2019 May 20. Review.


Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.

Pan B, Kusko R, Xiao W, Zheng Y, Liu Z, Xiao C, Sakkiah S, Guo W, Gong P, Zhang C, Ge W, Shi L, Tong W, Hong H.

BMC Bioinformatics. 2019 May 15;20(1):252. doi: 10.1186/s12859-019-2776-7.


Similarities and differences between variants called with human reference genome HG19 or HG38.

Pan B, Kusko R, Xiao W, Zheng Y, Liu Z, Xiao C, Sakkiah S, Guo W, Gong P, Zhang C, Ge W, Shi L, Tong W, Hong H.

BMC Bioinformatics. 2019 Mar 14;20(Suppl 2):101. doi: 10.1186/s12859-019-2620-0. Erratum in: BMC Bioinformatics. 2019 May 15;20(1):252.


Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA.

Wu L, Ingle T, Liu Z, Zhao-Wong A, Harris S, Thakkar S, Zhou G, Yang J, Xu J, Mehta D, Ge W, Tong W, Fang H.

BMC Bioinformatics. 2019 Mar 14;20(Suppl 2):97. doi: 10.1186/s12859-019-2628-5.


Computational prediction models for assessing endocrine disrupting potential of chemicals.

Sakkiah S, Guo W, Pan B, Kusko R, Tong W, Hong H.

J Environ Sci Health C Environ Carcinog Ecotoxicol Rev. 2018;36(4):192-218. doi: 10.1080/10590501.2018.1537132. Epub 2019 Jan 11. Review.


Toxicogenomics: A 2020 Vision.

Liu Z, Huang R, Roberts R, Tong W.

Trends Pharmacol Sci. 2019 Feb;40(2):92-103. doi: 10.1016/ Epub 2018 Dec 26. Review.


Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences.

Bushel PR, Tong W.

Front Genet. 2018 Nov 27;9:563. doi: 10.3389/fgene.2018.00563. eCollection 2018. No abstract available.


The Development of a Database for Herbal and Dietary Supplement Induced Liver Toxicity.

Zhu J, Seo JE, Wang S, Ashby K, Ballard R, Yu D, Ning B, Agarwal R, Borlak J, Tong W, Chen M.

Int J Mol Sci. 2018 Sep 28;19(10). pii: E2955. doi: 10.3390/ijms19102955.


Application of genome analysis strategies in the clinical testing for pediatric diseases.

Jin Y, Zhang L, Ning B, Hong H, Xiao W, Tong W, Tao Y, Ni X, Shi T, Guo Y.

Pediatr Investig. 2018 Jul 16;2(2):72-81. doi: 10.1002/ped4.12044.


Emerging technologies for food and drug safety.

Slikker W Jr, de Souza Lima TA, Archella D, de Silva JB Junior, Barton-Maclaren T, Bo L, Buvinich D, Chaudhry Q, Chuan P, Deluyker H, Domselaar G, Freitas M, Hardy B, Eichler HG, Hugas M, Lee K, Liao CD, Loo LH, Okuda H, Orisakwe OE, Patri A, Sactitono C, Shi L, Silva P, Sistare F, Thakkar S, Tong W, Valdez ML, Whelan M, Zhao-Wong A.

Regul Toxicol Pharmacol. 2018 Oct;98:115-128. doi: 10.1016/j.yrtph.2018.07.013. Epub 2018 Jul 23.


Drug-Induced Rhabdomyolysis Atlas (DIRA) for idiosyncratic adverse drug reaction management.

Wen Z, Liang Y, Hao Y, Delavan B, Huang R, Mikailov M, Tong W, Li M, Liu Z.

Drug Discov Today. 2019 Jan;24(1):9-15. doi: 10.1016/j.drudis.2018.06.006. Epub 2018 Jun 11.


Structural Changes Due to Antagonist Binding in Ligand Binding Pocket of Androgen Receptor Elucidated Through Molecular Dynamics Simulations.

Sakkiah S, Kusko R, Pan B, Guo W, Ge W, Tong W, Hong H.

Front Pharmacol. 2018 May 15;9:492. doi: 10.3389/fphar.2018.00492. eCollection 2018.


Comparing SVM and ANN based Machine Learning Methods for Species Identification of Food Contaminating Beetles.

Bisgin H, Bera T, Ding H, Semey HG, Wu L, Liu Z, Barnes AE, Langley DA, Pava-Ripoll M, Vyas HJ, Tong W, Xu J.

Sci Rep. 2018 Apr 25;8(1):6532. doi: 10.1038/s41598-018-24926-7.


Competitive docking model for prediction of the human nicotinic acetylcholine receptor α7 binding of tobacco constituents.

Ng HW, Leggett C, Sakkiah S, Pan B, Ye H, Wu L, Selvaraj C, Tong W, Hong H.

Oncotarget. 2018 Feb 8;9(24):16899-16916. doi: 10.18632/oncotarget.24458. eCollection 2018 Mar 30.


Transcriptional Responses Reveal Similarities Between Preclinical Rat Liver Testing Systems.

Liu Z, Delavan B, Roberts R, Tong W.

Front Genet. 2018 Mar 20;9:74. doi: 10.3389/fgene.2018.00074. eCollection 2018.


Evaluation of Bioinformatics Approaches for Next-Generation Sequencing Analysis of microRNAs with a Toxicogenomics Study Design.

Bisgin H, Gong B, Wang Y, Tong W.

Front Genet. 2018 Feb 6;9:22. doi: 10.3389/fgene.2018.00022. eCollection 2018.


Scaling bioinformatics applications on HPC.

Mikailov M, Luo FJ, Barkley S, Valleru L, Whitney S, Liu Z, Thakkar S, Tong W, Petrick N.

BMC Bioinformatics. 2017 Dec 28;18(Suppl 14):501. doi: 10.1186/s12859-017-1902-7.


Endocrine Disrupting Chemicals Mediated through Binding Androgen Receptor Are Associated with Diabetes Mellitus.

Sakkiah S, Wang T, Zou W, Wang Y, Pan B, Tong W, Hong H.

Int J Environ Res Public Health. 2017 Dec 23;15(1). pii: E25. doi: 10.3390/ijerph15010025. Review.

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