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Items: 1 to 20 of 60

1.

The Structural Properties in Solution of the Intrinsically Mixed Folded Protein Ataxin-3.

Sicorello A, Kelly G, Oregioni A, Nováček J, Sklenář V, Pastore A.

Biophys J. 2018 Jul 3;115(1):59-71. doi: 10.1016/j.bpj.2018.05.029.

2.

iNEXT: a European facility network to stimulate translational structural biology.

iNEXT Consortium.

FEBS Lett. 2018 Jun;592(12):1909-1917. doi: 10.1002/1873-3468.13062. Epub 2018 May 15. No abstract available.

3.

Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Srb P, Nováček J, Kadeřávek P, Rabatinová A, Krásný L, Žídková J, Bobálová J, Sklenář V, Žídek L.

J Biomol NMR. 2017 Nov;69(3):133-146. doi: 10.1007/s10858-017-0138-1. Epub 2017 Oct 25.

PMID:
29071460
4.

The Eighth Central European Conference "Chemistry towards Biology": Snapshot.

Perczel A, Atanasov AG, Sklenář V, Nováček J, Papoušková V, Kadeřávek P, Žídek L, Kozłowski H, Wątły J, Hecel A, Kołkowska P, Koča J, Svobodová-Vařeková R, Pravda L, Sehnal D, Horský V, Geidl S, Enriz RD, Matějka P, Jeništová A, Dendisová M, Kokaislová A, Weissig V, Olsen M, Coffey A, Ajuebor J, Keary R, Sanz-Gaitero M, van Raaij MJ, McAuliffe O, Waltenberger B, Mocan A, Šmejkal K, Heiss EH, Diederich M, Musioł R, Košmrlj J, Polański J, Jampílek J.

Molecules. 2016 Oct 17;21(10). pii: E1381.

5.

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Vavrinská A, Zelinka J, Šebera J, Sychrovský V, Fiala R, Boelens R, Sklenář V, Trantírek L.

J Biomol NMR. 2016 May;65(1):49. No abstract available.

6.

Spectral density mapping at multiple magnetic fields suitable for (13)C NMR relaxation studies.

Kadeřávek P, Zapletal V, Fiala R, Srb P, Padrta P, Přecechtělová JP, Šoltésová M, Kowalewski J, Widmalm G, Chmelík J, Sklenář V, Žídek L.

J Magn Reson. 2016 May;266:23-40. doi: 10.1016/j.jmr.2016.02.016. Epub 2016 Mar 8.

PMID:
27003380
7.

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Vavrinská A, Zelinka J, Šebera J, Sychrovský V, Fiala R, Boelens R, Sklenář V, Trantírek L.

J Biomol NMR. 2016 Jan;64(1):53-62. doi: 10.1007/s10858-015-0005-x. Epub 2015 Dec 19. Erratum in: J Biomol NMR. 2016 May;65(1):49.

8.

Nucleic Acid Quadruplexes Based on 8-Halo-9-deazaxanthines: Energetics and Noncovalent Interactions in Quadruplex Stems.

Yurenko YP, Novotný J, Mitoraj MP, Sklenář V, Michalak A, Marek R.

J Chem Theory Comput. 2014 Dec 9;10(12):5353-65. doi: 10.1021/ct5007554.

PMID:
26583219
9.

Substituting CF2 for O4' in Components of Nucleic Acids: Towards Systems with Reduced Propensity to Form Abasic Lesions.

Yurenko YP, Novotný J, Sklenář V, Marek R.

Chemistry. 2015 Dec 1;21(49):17933-43. doi: 10.1002/chem.201502977. Epub 2015 Oct 23.

PMID:
26493955
10.

Conformational dynamics and antigenicity in the disordered malaria antigen merozoite surface protein 2.

MacRaild CA, Zachrdla M, Andrew D, Krishnarjuna B, Nováček J, Žídek L, Sklenář V, Richards JS, Beeson JG, Anders RF, Norton RS.

PLoS One. 2015 Mar 5;10(3):e0119899. doi: 10.1371/journal.pone.0119899. eCollection 2015.

11.

Loss of loop adenines alters human telomere d[AG3(TTAG3)3] quadruplex folding.

Babinský M, Fiala R, Kejnovská I, Bednářová K, Marek R, Sagi J, Sklenář V, Vorlíčková M.

Nucleic Acids Res. 2014 Dec 16;42(22):14031-41. doi: 10.1093/nar/gku1245. Epub 2014 Nov 26.

12.

Dissection of binding between a phosphorylated tyrosine hydroxylase peptide and 14-3-3zeta: A complex story elucidated by NMR.

Hritz J, Byeon IJ, Krzysiak T, Martinez A, Sklenar V, Gronenborn AM.

Biophys J. 2014 Nov 4;107(9):2185-94. doi: 10.1016/j.bpj.2014.08.039.

13.

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

Vymětal J, Bathula SR, Cerný J, Chaloupková R, Zídek L, Sklenář V, Vondrášek J.

Protein Eng Des Sel. 2014 Dec;27(12):463-72. doi: 10.1093/protein/gzu046. Epub 2014 Oct 24.

PMID:
25344682
14.

X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase.

Demo G, Papoušková V, Komárek J, Kadeřávek P, Otrusinová O, Srb P, Rabatinová A, Krásný L, Žídek L, Sklenář V, Wimmerová M.

J Struct Biol. 2014 Aug;187(2):174-186. doi: 10.1016/j.jsb.2014.06.001. Epub 2014 Jun 14.

PMID:
24937760
15.

Retraction: Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69⁺ killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry 2010, 53, 4050-65.

Kovalová A, Ledvina M, Saman D, Zyka D, Kubíčková M, Zídek L, Sklenář V, Pompach P, Kavan D, Bílý J, Vaněk O, Kubínková Z, Libigerová M, Ivanová L, Antolíková M, Mrázek H, Rozbeský D, Hofbauerová K, Křen V, Bezouška K.

J Med Chem. 2014 Jun 26;57(12):5477. doi: 10.1021/jm5007726. Epub 2014 Jun 5. No abstract available.

PMID:
24899138
16.

Toward optimal-resolution NMR of intrinsically disordered proteins.

Nováček J, Žídek L, Sklenář V.

J Magn Reson. 2014 Apr;241:41-52. doi: 10.1016/j.jmr.2013.12.008. Review.

PMID:
24656079
17.

Spectral density mapping protocols for analysis of molecular motions in disordered proteins.

Kadeřávek P, Zapletal V, Rabatinová A, Krásný L, Sklenář V, Žídek L.

J Biomol NMR. 2014 Mar;58(3):193-207. doi: 10.1007/s10858-014-9816-4. Epub 2014 Feb 11.

PMID:
24515886
18.

Exploring non-covalent interactions in guanine- and xanthine-based model DNA quadruplex structures: a comprehensive quantum chemical approach.

Yurenko YP, Novotný J, Sklenář V, Marek R.

Phys Chem Chem Phys. 2014 Feb 7;16(5):2072-84. doi: 10.1039/c3cp53875c.

PMID:
24343126
19.

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Nováček J, Janda L, Dopitová R, Žídek L, Sklenář V.

J Biomol NMR. 2013 Aug;56(4):291-301. doi: 10.1007/s10858-013-9761-7. Epub 2013 Jul 23.

PMID:
23877929
20.

Structural study of the partially disordered full-length δ subunit of RNA polymerase from Bacillus subtilis.

Papoušková V, Kadeřávek P, Otrusinová O, Rabatinová A, ŠSanderová H, Nováček J, Krásný L, Sklenář V, Žídek L.

Chembiochem. 2013 Sep 23;14(14):1772-9. doi: 10.1002/cbic.201300226. Epub 2013 Jul 18. Erratum in: Chembiochem. 2013 Sep 23;14(14):1684.

PMID:
23868186

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