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Items: 7

1.

ValTrendsDB: bringing Protein Data Bank validation information closer to the user.

Horský V, Bendová V, Toušek D, Koča J, Svobodová R.

Bioinformatics. 2019 Dec 15;35(24):5389-5390. doi: 10.1093/bioinformatics/btz532.

2.

Worldwide Protein Data Bank validation information: usage and trends.

Smart OS, Horský V, Gore S, Svobodová Vařeková R, Bendová V, Kleywegt GJ, Velankar S.

Acta Crystallogr D Struct Biol. 2018 Mar 1;74(Pt 3):237-244. doi: 10.1107/S2059798318003303. Epub 2018 Mar 2.

3.

Validation of ligands in macromolecular structures determined by X-ray crystallography.

Smart OS, Horský V, Gore S, Svobodová Vařeková R, Bendová V, Kleywegt GJ, Velankar S.

Acta Crystallogr D Struct Biol. 2018 Mar 1;74(Pt 3):228-236. doi: 10.1107/S2059798318002541. Epub 2018 Mar 2.

4.

NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges.

Raček T, Pazúriková J, Svobodová Vařeková R, Geidl S, Křenek A, Falginella FL, Horský V, Hejret V, Koča J.

J Cheminform. 2016 Oct 17;8:57. eCollection 2016.

5.

The Eighth Central European Conference "Chemistry towards Biology": Snapshot.

Perczel A, Atanasov AG, Sklenář V, Nováček J, Papoušková V, Kadeřávek P, Žídek L, Kozłowski H, Wątły J, Hecel A, Kołkowska P, Koča J, Svobodová-Vařeková R, Pravda L, Sehnal D, Horský V, Geidl S, Enriz RD, Matějka P, Jeništová A, Dendisová M, Kokaislová A, Weissig V, Olsen M, Coffey A, Ajuebor J, Keary R, Sanz-Gaitero M, van Raaij MJ, McAuliffe O, Waltenberger B, Mocan A, Šmejkal K, Heiss EH, Diederich M, Musioł R, Košmrlj J, Polański J, Jampílek J.

Molecules. 2016 Oct 17;21(10). pii: E1381.

6.

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank.

Sehnal D, Svobodová Vařeková R, Pravda L, Ionescu CM, Geidl S, Horský V, Jaiswal D, Wimmerová M, Koča J.

Nucleic Acids Res. 2015 Jan;43(Database issue):D369-75. doi: 10.1093/nar/gku1118. Epub 2014 Nov 11.

7.

MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes.

Vařeková RS, Jaiswal D, Sehnal D, Ionescu CM, Geidl S, Pravda L, Horský V, Wimmerová M, Koča J.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W227-33. doi: 10.1093/nar/gku426. Epub 2014 May 21.

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