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Items: 1 to 20 of 55

1.

The anti-cancer drugs curaxins target spatial genome organization.

Kantidze OL, Luzhin AV, Nizovtseva EV, Safina A, Valieva ME, Golov AK, Velichko AK, Lyubitelev AV, Feofanov AV, Gurova KV, Studitsky VM, Razin SV.

Nat Commun. 2019 Mar 29;10(1):1441. doi: 10.1038/s41467-019-09500-7.

2.

Time-resolved analysis of transcription through chromatin.

Chang HW, Hsieh FK, Patel SS, Studitsky VM.

Methods. 2019 Apr 15;159-160:90-95. doi: 10.1016/j.ymeth.2019.01.016. Epub 2019 Jan 29.

PMID:
30707952
3.

Mechanism of FACT removal from transcribed genes by anticancer drugs curaxins.

Chang HW, Valieva ME, Safina A, Chereji RV, Wang J, Kulaeva OI, Morozov AV, Kirpichnikov MP, Feofanov AV, Gurova KV, Studitsky VM.

Sci Adv. 2018 Nov 7;4(11):eaav2131. doi: 10.1126/sciadv.aav2131. eCollection 2018 Nov.

4.

Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.

Shaytan AK, Xiao H, Armeev GA, Gaykalova DA, Komarova GA, Wu C, Studitsky VM, Landsman D, Panchenko AR.

Nat Protoc. 2018 Nov;13(11):2535-2556. doi: 10.1038/s41596-018-0048-z.

5.

Structure and function of the histone chaperone FACT - Resolving FACTual issues.

Gurova K, Chang HW, Valieva ME, Sandlesh P, Studitsky VM.

Biochim Biophys Acta Gene Regul Mech. 2018 Jul 25. pii: S1874-9399(18)30159-7. doi: 10.1016/j.bbagrm.2018.07.008. [Epub ahead of print] Review.

PMID:
30055319
6.

Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization.

McCullough LL, Connell Z, Xin H, Studitsky VM, Feofanov AV, Valieva ME, Formosa T.

J Biol Chem. 2018 Apr 20;293(16):6121-6133. doi: 10.1074/jbc.RA117.000199. Epub 2018 Mar 7.

7.

Unfolding of core nucleosomes by PARP-1 revealed by spFRET microscopy.

Sultanov DC, Gerasimova NS, Kudryashova KS, Maluchenko NV, Kotova EY, Langelier MF, Pascal JM, Kirpichnikov MP, Feofanov AV, Studitsky VM.

AIMS Genet. 2017;4(1):21-31. doi: 10.3934/genet.2017.1.21. Epub 2017 Jan 5.

8.

Towards quantitative analysis of gene regulation by enhancers.

Nizovtseva EV, Todolli S, Olson WK, Studitsky VM.

Epigenomics. 2017 Sep;9(9):1219-1231. doi: 10.2217/epi-2017-0061. Epub 2017 Aug 11. Review.

9.

Chromatin replication: TRANSmitting the histone code.

Chang HW, Studitsky VM.

J Nat Sci. 2017 Feb;3(2). pii: e322.

10.

Stabilization of Nucleosomes by Histone Tails and by FACT Revealed by spFRET Microscopy.

Valieva ME, Gerasimova NS, Kudryashova KS, Kozlova AL, Kirpichnikov MP, Hu Q, Botuyan MV, Mer G, Feofanov AV, Studitsky VM.

Cancers (Basel). 2017 Jan 6;9(1). pii: E3. doi: 10.3390/cancers9010003.

11.

Nucleosome-free DNA regions differentially affect distant communication in chromatin.

Nizovtseva EV, Clauvelin N, Todolli S, Polikanov YS, Kulaeva OI, Wengrzynek S, Olson WK, Studitsky VM.

Nucleic Acids Res. 2017 Apr 7;45(6):3059-3067. doi: 10.1093/nar/gkw1240.

12.

Overcoming a nucleosomal barrier to replication.

Chang HW, Pandey M, Kulaeva OI, Patel SS, Studitsky VM.

Sci Adv. 2016 Nov 11;2(11):e1601865. eCollection 2016 Nov.

13.

Large-scale ATP-independent nucleosome unfolding by a histone chaperone.

Valieva ME, Armeev GA, Kudryashova KS, Gerasimova NS, Shaytan AK, Kulaeva OI, McCullough LL, Formosa T, Georgiev PG, Kirpichnikov MP, Studitsky VM, Feofanov AV.

Nat Struct Mol Biol. 2016 Dec;23(12):1111-1116. doi: 10.1038/nsmb.3321. Epub 2016 Nov 7.

14.

Nucleosomal Barrier to Transcription: Structural Determinants and Changes in Chromatin Structure.

Studitsky VM, Nizovtseva EV, Shaytan AK, Luse DS.

Biochem Mol Biol J. 2016;2(2). pii: 8. Epub 2016 May 30.

15.

Structure of transcribed chromatin is a sensor of DNA damage.

Pestov NA, Gerasimova NS, Kulaeva OI, Studitsky VM.

Sci Adv. 2015 Jul 3;1(6):e1500021. doi: 10.1126/sciadv.1500021. eCollection 2015 Jul.

16.

Structural analysis of nucleosomal barrier to transcription.

Gaykalova DA, Kulaeva OI, Volokh O, Shaytan AK, Hsieh FK, Kirpichnikov MP, Sokolova OS, Studitsky VM.

Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5787-95. doi: 10.1073/pnas.1508371112. Epub 2015 Oct 12.

17.

Preparation of mononucleosomal templates for analysis of transcription with RNA polymerase using spFRET.

Kudryashova KS, Chertkov OV, Nikitin DV, Pestov NA, Kulaeva OI, Efremenko AV, Solonin AS, Kirpichnikov MP, Studitsky VM, Feofanov AV.

Methods Mol Biol. 2015;1288:395-412. doi: 10.1007/978-1-4939-2474-5_23.

18.

Preparation and analysis of positioned mononucleosomes.

Kulaeva OI, Studitsky VM.

Methods Mol Biol. 2015;1288:15-26. doi: 10.1007/978-1-4939-2474-5_2.

19.

Experimental analysis of hFACT action during Pol II transcription in vitro.

Hsieh FK, Kulaeva OI, Studitsky VM.

Methods Mol Biol. 2015;1276:315-26. doi: 10.1007/978-1-4939-2392-2_19.

20.

Transcription through enhancers suppresses their activity in Drosophila.

Erokhin M, Davydova A, Parshikov A, Studitsky VM, Georgiev P, Chetverina D.

Epigenetics Chromatin. 2013 Sep 26;6(1):31. doi: 10.1186/1756-8935-6-31.

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