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Items: 1 to 20 of 60

1.

Identification of infectious disease-associated host genes using machine learning techniques.

Barman RK, Mukhopadhyay A, Maulik U, Das S.

BMC Bioinformatics. 2019 Dec 27;20(1):736. doi: 10.1186/s12859-019-3317-0.

2.

Evolutionary Analyses of Sequence and Structure Space Unravel the Structural Facets of SOD1.

Chowdhury S, Sanyal D, Sen S, Uversky VN, Maulik U, Chattopadhyay K.

Biomolecules. 2019 Dec 4;9(12). pii: E826. doi: 10.3390/biom9120826.

3.

Mutational Landscape of the BAP1 Locus Reveals an Intrinsic Control to Regulate the miRNA Network and the Binding of Protein Complexes in Uveal Melanoma.

Sharma A, Biswas A, Liu H, Sen S, Paruchuri A, Katsonis P, Lichtarge O, Chand Dakal T, Maulik U, Gromiha MM, Bandyopadhyay S, Ludwig M, Holz FG, Loeffler KU, Herwig-Carl MC.

Cancers (Basel). 2019 Oct 19;11(10). pii: E1600. doi: 10.3390/cancers11101600.

4.

Network mapping of the conformational heterogeneity of SOD1 by deploying statistical cluster analysis of FTIR spectra.

Chowdhury S, Sen S, Banerjee A, Uversky VN, Maulik U, Chattopadhyay K.

Cell Mol Life Sci. 2019 Oct;76(20):4145-4154. doi: 10.1007/s00018-019-03108-2. Epub 2019 Apr 22.

PMID:
31011770
5.

Understanding the evolutionary trend of intrinsically structural disorders in cancer relevant proteins as probed by Shannon entropy scoring and structure network analysis.

Sen S, Dey A, Chowdhury S, Maulik U, Chattopadhyay K.

BMC Bioinformatics. 2019 Feb 4;19(Suppl 13):549. doi: 10.1186/s12859-018-2552-0.

6.

Recent advancement toward significant association between disordered transcripts and virus-infected diseases: a survey.

Sen S, Maulik U.

Brief Funct Genomics. 2018 Nov 26;17(6):458-470. doi: 10.1093/bfgp/ely021. Review.

PMID:
29992310
7.

A Statistical Approach to Detect Intrinsically Disordered Proteins Associated with Uterine Leiomyoma.

Maulik U, Uversky VN, Sen S.

Protein Pept Lett. 2018;25(5):483-491. doi: 10.2174/0929866525666180326114325.

PMID:
29577850
8.

Computational Prediction of HCV-Human Protein-Protein Interaction via Topological Analysis of HCV Infected PPI Modules.

Ray S, Alberuni S, Maulik U.

IEEE Trans Nanobioscience. 2018 Mar;17(1):55-61. doi: 10.1109/TNB.2018.2797696.

PMID:
29570075
9.

Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus.

Maulik U, Sen S, Mallik S, Bandyopadhyay S.

BMC Genet. 2018 Jan 22;19(1):9. doi: 10.1186/s12863-017-0574-7.

10.

A review of computational approaches for analysis of hepatitis C virus-mediated liver diseases.

Ray S, Maulik U, Mukhopadhyay A.

Brief Funct Genomics. 2018 Nov 26;17(6):428-440. doi: 10.1093/bfgp/elx040. Review.

PMID:
29194530
11.

Decoding critical long non-coding RNA in ovarian cancer epithelial-to-mesenchymal transition.

Mitra R, Chen X, Greenawalt EJ, Maulik U, Jiang W, Zhao Z, Eischen CM.

Nat Commun. 2017 Nov 17;8(1):1604. doi: 10.1038/s41467-017-01781-0.

12.

Identifying protein complexes in PPI network using non-cooperative sequential game.

Maulik U, Basu S, Ray S.

Sci Rep. 2017 Aug 21;7(1):8410. doi: 10.1038/s41598-017-08760-x.

13.

Identifying differentially coexpressed module during HIV disease progression: A multiobjective approach.

Ray S, Maulik U.

Sci Rep. 2017 Mar 7;7(1):86. doi: 10.1038/s41598-017-00090-2.

14.

Identifying Epigenetic Biomarkers using Maximal Relevance and Minimal Redundancy Based Feature Selection for Multi-Omics Data.

Mallik S, Bhadra T, Maulik U.

IEEE Trans Nanobioscience. 2017 Jan;16(1):3-10. doi: 10.1109/TNB.2017.2650217. Epub 2017 Jan 9.

PMID:
28092570
15.

Discovering Perturbation of Modular Structure in HIV Progression by Integrating Multiple Data Sources Through Non-Negative Matrix Factorization.

Ray S, Maulik U.

IEEE/ACM Trans Comput Biol Bioinform. 2018 May-Jun;15(3):869-877. doi: 10.1109/TCBB.2016.2642184. Epub 2016 Dec 20.

PMID:
28029629
16.

IDPT: Insights into potential intrinsically disordered proteins through transcriptomic analysis of genes for prostate carcinoma epigenetic data.

Mallik S, Sen S, Maulik U.

Gene. 2016 Jul 15;586(1):87-96. doi: 10.1016/j.gene.2016.03.056. Epub 2016 Apr 7.

PMID:
27060408
17.

Predicting Protein-Protein Interaction Sites with a Novel Membership Based Fuzzy SVM Classifier.

Sriwastava BK, Basu S, Maulik U.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Nov-Dec;12(6):1394-404. doi: 10.1109/TCBB.2015.2401018.

PMID:
26684462
19.

Gene microarray data analysis using parallel point-symmetry-based clustering.

Sarkar A, Maulik U.

Int J Data Min Bioinform. 2015;11(3):277-300.

PMID:
26333263
20.

MiRNA-TF-gene network analysis through ranking of biomolecules for multi-informative uterine leiomyoma dataset.

Mallik S, Maulik U.

J Biomed Inform. 2015 Oct;57:308-19. doi: 10.1016/j.jbi.2015.08.014. Epub 2015 Aug 19.

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