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Items: 1 to 20 of 83

1.

Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.

Kuwabara N, Imae R, Manya H, Tanaka T, Mizuno M, Tsumoto H, Kanagawa M, Kobayashi K, Toda T, Senda T, Endo T, Kato R.

Nat Commun. 2020 Jan 16;11(1):303. doi: 10.1038/s41467-019-14220-z.

PMID:
31949166
2.

Correction to: Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.

Koesoema AA, Sugiyama Y, Xu Z, Standley DM, Senda M, Senda T, Matsuda T.

Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9555. doi: 10.1007/s00253-019-10138-0.

PMID:
31728584
3.

Reversible control of enantioselectivity by the length of ketone substituent in biocatalytic reduction.

Koesoema AA, Sugiyama Y, Sriwong KT, Xu Z, Verina S, Standley DM, Senda M, Senda T, Matsuda T.

Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9529-9541. doi: 10.1007/s00253-019-10206-5. Epub 2019 Nov 13.

PMID:
31720775
4.

Anti-Tumor Potential of IMP Dehydrogenase Inhibitors: A Century-Long Story.

Naffouje R, Grover P, Yu H, Sendilnathan A, Wolfe K, Majd N, Smith EP, Takeuchi K, Senda T, Kofuji S, Sasaki AT.

Cancers (Basel). 2019 Sep 11;11(9). pii: E1346. doi: 10.3390/cancers11091346. Review.

5.

Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.

Koesoema AA, Sugiyama Y, Xu Z, Standley DM, Senda M, Senda T, Matsuda T.

Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9543-9553. doi: 10.1007/s00253-019-10093-w. Epub 2019 Nov 15. Erratum in: Appl Microbiol Biotechnol. 2019 Nov 15;:.

PMID:
31482280
6.

Serial Femtosecond X-Ray Diffraction of HIV-1 Gag MA-IP6 Microcrystals at Ambient Temperature.

I Ciftci H, G Sierra R, Yoon CH, Su Z, Tateishi H, Koga R, Kotaro K, Yumoto F, Senda T, Liang M, Wakatsuki S, Otsuka M, Fujita M, DeMirci H.

Int J Mol Sci. 2019 Apr 3;20(7). pii: E1675. doi: 10.3390/ijms20071675.

7.

Functional activity of the H3.3 histone chaperone complex HIRA requires trimerization of the HIRA subunit.

Ray-Gallet D, Ricketts MD, Sato Y, Gupta K, Boyarchuk E, Senda T, Marmorstein R, Almouzni G.

Nat Commun. 2018 Aug 6;9(1):3103. doi: 10.1038/s41467-018-05581-y.

8.

Structural and Computational Bases for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis.

Nakashima Y, Mitsuhashi T, Matsuda Y, Senda M, Sato H, Yamazaki M, Uchiyama M, Senda T, Abe I.

J Am Chem Soc. 2018 Aug 1;140(30):9743-9750. doi: 10.1021/jacs.8b06084. Epub 2018 Jul 18.

PMID:
29972643
9.

Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination.

Katsuyama Y, Sato Y, Sugai Y, Higashiyama Y, Senda M, Senda T, Ohnishi Y.

FEBS J. 2018 Apr;285(8):1540-1555. doi: 10.1111/febs.14429. Epub 2018 Mar 24.

10.

Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region.

Koentjoro MP, Adachi N, Senda M, Ogawa N, Senda T.

FEBS J. 2018 Mar;285(5):977-989. doi: 10.1111/febs.14380. Epub 2018 Jan 28.

11.

Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.

Nakashima Y, Mori T, Nakamura H, Awakawa T, Hoshino S, Senda M, Senda T, Abe I.

Nat Commun. 2018 Jan 9;9(1):104. doi: 10.1038/s41467-017-02371-w.

12.

Leading role of TBP in the Establishment of Complexity in Eukaryotic Transcription Initiation Systems.

Kawakami E, Adachi N, Senda T, Horikoshi M.

Cell Rep. 2017 Dec 26;21(13):3941-3956. doi: 10.1016/j.celrep.2017.12.034.

13.

Anaerobic crystallization of proteins.

Senda M, Senda T.

Biophys Rev. 2018 Apr;10(2):183-189. doi: 10.1007/s12551-017-0345-8. Epub 2017 Dec 2. Review.

14.

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T.

IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1.

15.

Amino acid residues critical for DNA binding and inducer recognition in CbnR, a LysR-type transcriptional regulator from Cupriavidus necator NH9.

Moriuchi R, Takada K, Takabayashi M, Yamamoto Y, Shimodaira J, Kuroda N, Akiyama E, Udagawa M, Minai R, Fukuda M, Senda T, Ogawa N.

Biosci Biotechnol Biochem. 2017 Nov;81(11):2119-2129. doi: 10.1080/09168451.2017.1373592. Epub 2017 Sep 22.

PMID:
28936918
16.

Differential Mechanisms for SHP2 Binding and Activation Are Exploited by Geographically Distinct Helicobacter pylori CagA Oncoproteins.

Hayashi T, Senda M, Suzuki N, Nishikawa H, Ben C, Tang C, Nagase L, Inoue K, Senda T, Hatakeyama M.

Cell Rep. 2017 Sep 19;20(12):2876-2890. doi: 10.1016/j.celrep.2017.08.080.

17.

Characterization of Heme Orientational Disorder in a Myoglobin Reconstituted with a Trifluoromethyl-Group-Substituted Heme Cofactor.

Kanai Y, Harada A, Shibata T, Nishimura R, Namiki K, Watanabe M, Nakamura S, Yumoto F, Senda T, Suzuki A, Neya S, Yamamoto Y.

Biochemistry. 2017 Aug 29;56(34):4500-4508. doi: 10.1021/acs.biochem.7b00457. Epub 2017 Aug 16.

PMID:
28758387
18.

The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors.

Sato M, Liebschner D, Yamada Y, Matsugaki N, Arakawa T, Wills SS, Hattie M, Stubbs KA, Ito T, Senda T, Ashida H, Fushinobu S.

J Biol Chem. 2017 Jul 21;292(29):12126-12138. doi: 10.1074/jbc.M117.777391. Epub 2017 May 25.

19.

The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6.

Harada A, Kamimura N, Takeuchi K, Yu HY, Masai E, Senda T.

FEBS J. 2017 Jun;284(12):1855-1867. doi: 10.1111/febs.14085. Epub 2017 May 11.

20.

Improved method for soluble expression and rapid purification of yeast TFIIA.

Adachi N, Aizawa K, Kratzer Y, Saijo S, Shimizu N, Senda T.

Protein Expr Purif. 2017 May;133:50-56. doi: 10.1016/j.pep.2017.02.013. Epub 2017 Mar 1.

PMID:
28259734

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