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Items: 1 to 20 of 66

1.

Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem.

Venkatesh D, Poen MJ, Bestebroer TM, Scheuer RD, Vuong O, Chkhaidze M, Machablishvili A, Mamuchadze J, Ninua L, Fedorova NB, Halpin RA, Lin X, Ransier A, Stockwell TB, Wentworth DE, Kriti D, Dutta J, van Bakel H, Puranik A, Slomka MJ, Essen S, Brown IH, Fouchier RAM, Lewis NS.

J Virol. 2018 Jul 17;92(15). pii: e00433-18. doi: 10.1128/JVI.00433-18. Print 2018 Aug 1.

2.

A draft genome sequence for the Ixodes scapularis cell line, ISE6.

Miller JR, Koren S, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG.

F1000Res. 2018 Mar 8;7:297. doi: 10.12688/f1000research.13635.1. eCollection 2018.

3.

Large scale complete genome sequencing and phylodynamic analysis of eastern equine encephalitis virus reveal source-sink transmission dynamics in the United States.

Tan Y, Tsan-Yuk Lam T, Heberlein-Larson LA, Smole SC, Auguste AJ, Hennigan S, Halpin RA, Fedorova N, Puri V, Stockwell TB, Shilts MH, Andreadis T, Armstrong PM, Tesh RB, Weaver SC, Unnasch TR, Ciota AT, Kramer LD, Das SR.

J Virol. 2018 Apr 4. pii: JVI.00074-18. doi: 10.1128/JVI.00074-18. [Epub ahead of print]

PMID:
29618651
4.

Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens.

Loreille O, Ratnayake S, Bazinet AL, Stockwell TB, Sommer DD, Rohland N, Mallick S, Johnson PLF, Skoglund P, Onorato AJ, Bergman NH, Reich D, Irwin JA.

Genes (Basel). 2018 Mar 1;9(3). pii: E135. doi: 10.3390/genes9030135.

5.

Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012-2013.

Cobey S, Gouma S, Parkhouse K, Chambers BS, Ertl HC, Schmader KE, Halpin RA, Lin X, Stockwell TB, Das SR, Landon E, Tesic V, Youngster I, Pinsky BA, Wentworth DE, Hensley SE, Grad YH.

Clin Infect Dis. 2018 Jul 18;67(3):327-333. doi: 10.1093/cid/ciy097.

6.

Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens.

Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, Malathi J, Therese KL, Madhavan HN, Zhang Q, Ferreyra LJ, Jones MS, Rajaiya J, Dyer DW, Chodosh J, Seto D.

Emerg Microbes Infect. 2018 Feb 7;7(1):10. doi: 10.1038/s41426-017-0004-y.

7.

Genetic stability of foot-and-mouth disease virus during long-term infections in natural hosts.

Ramirez-Carvajal L, Pauszek SJ, Ahmed Z, Farooq U, Naeem K, Shabman RS, Stockwell TB, Rodriguez LL.

PLoS One. 2018 Feb 1;13(2):e0190977. doi: 10.1371/journal.pone.0190977. eCollection 2018.

8.

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation.

Miller JR, Koren S, Dilley KA, Puri V, Brown DM, Harkins DM, Thibaud-Nissen F, Rosen B, Chen XG, Tu Z, Sharakhov IV, Sharakhova MV, Sebra R, Stockwell TB, Bergman NH, Sutton GG, Phillippy AM, Piermarini PM, Shabman RS.

Gigascience. 2018 Mar 1;7(3):1-13. doi: 10.1093/gigascience/gix135.

9.

Cloning, Assembly, and Modification of the Primary Human Cytomegalovirus Isolate Toledo by Yeast-Based Transformation-Associated Recombination.

Vashee S, Stockwell TB, Alperovich N, Denisova EA, Gibson DG, Cady KC, Miller K, Kannan K, Malouli D, Crawford LB, Voorhies AA, Bruening E, Caposio P, Früh K.

mSphere. 2017 Oct 4;2(5). pii: e00331-17. doi: 10.1128/mSphereDirect.00331-17. eCollection 2017 Sep-Oct.

10.

Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses.

Zhou B, Deng YM, Barnes JR, Sessions OM, Chou TW, Wilson M, Stark TJ, Volk M, Spirason N, Halpin RA, Kamaraj US, Ding T, Stockwell TB, Salvatore M, Ghedin E, Barr IG, Wentworth DE.

J Clin Microbiol. 2017 Dec;55(12):3492-3501. doi: 10.1128/JCM.00957-17. Epub 2017 Oct 4.

11.

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas.

Forrester NL, Wertheim JO, Dugan VG, Auguste AJ, Lin D, Adams AP, Chen R, Gorchakov R, Leal G, Estrada-Franco JG, Pandya J, Halpin RA, Hari K, Jain R, Stockwell TB, Das SR, Wentworth DE, Smith MD, Kosakovsky Pond SL, Weaver SC.

PLoS Negl Trop Dis. 2017 Aug 3;11(8):e0005693. doi: 10.1371/journal.pntd.0005693. eCollection 2017 Aug.

12.

Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock.

Shrivastava S, Puri V, Fedorova N, Amedeo P, Stockwell TB, Shabman RS, Rashid S, Pickett BE.

Genome Announc. 2017 Jul 27;5(30). pii: e00605-17. doi: 10.1128/genomeA.00605-17.

13.

Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid.

Miller JR, Dilley KA, Harkins DM, Torralba MG, Moncera KJ, Beeri K, Goglin K, Stockwell TB, Sutton GG, Shabman RS.

F1000Res. 2017 May 17;6:688. doi: 10.12688/f1000research.11629.1. eCollection 2017.

14.

The Ebola virus VP35 protein binds viral immunostimulatory and host RNAs identified through deep sequencing.

Dilley KA, Voorhies AA, Luthra P, Puri V, Stockwell TB, Lorenzi H, Basler CF, Shabman RS.

PLoS One. 2017 Jun 21;12(6):e0178717. doi: 10.1371/journal.pone.0178717. eCollection 2017.

15.

The effective rate of influenza reassortment is limited during human infection.

Sobel Leonard A, McClain MT, Smith GJ, Wentworth DE, Halpin RA, Lin X, Ransier A, Stockwell TB, Das SR, Gilbert AS, Lambkin-Williams R, Ginsburg GS, Woods CW, Koelle K, Illingworth CJ.

PLoS Pathog. 2017 Feb 7;13(2):e1006203. doi: 10.1371/journal.ppat.1006203. eCollection 2017 Feb.

16.

A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses.

Moser LA, Ramirez-Carvajal L, Puri V, Pauszek SJ, Matthews K, Dilley KA, Mullan C, McGraw J, Khayat M, Beeri K, Yee A, Dugan V, Heise MT, Frieman MB, Rodriguez LL, Bernard KA, Wentworth DE, Stockwell TB, Shabman RS.

mSystems. 2016 Jun 7;1(3). pii: e00039-15. eCollection 2016 May-Jun.

17.

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification.

Sobel Leonard A, McClain MT, Smith GJ, Wentworth DE, Halpin RA, Lin X, Ransier A, Stockwell TB, Das SR, Gilbert AS, Lambkin-Williams R, Ginsburg GS, Woods CW, Koelle K.

J Virol. 2016 Nov 28;90(24):11247-11258. Print 2016 Dec 15.

18.

Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia.

Duong V, Mey C, Eloit M, Zhu H, Danet L, Huang Z, Zou G, Tarantola A, Cheval J, Perot P, Laurent D, Richner B, Ky S, Heng S, Touch S, Sovann L, van Doorn R, Tan Tran T, Farrar JJ, Wentworth DE, Das SR, Stockwell TB, Manuguerra JC, Delpeyroux F, Guan Y, Altmeyer R, Buchy P.

Emerg Microbes Infect. 2016 Sep 21;5(9):e104. doi: 10.1038/emi.2016.101.

19.

Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus.

Zhou B, Meliopoulos VA, Wang W, Lin X, Stucker KM, Halpin RA, Stockwell TB, Schultz-Cherry S, Wentworth DE.

J Virol. 2016 Sep 12;90(19):8454-63. doi: 10.1128/JVI.00163-16. Print 2016 Oct 1.

20.

Isolation and Characterization of a Novel Gammaherpesvirus from a Microbat Cell Line.

Shabman RS, Shrivastava S, Tsibane T, Attie O, Jayaprakash A, Mire CE, Dilley KE, Puri V, Stockwell TB, Geisbert TW, Sachidanandam R, Basler CF.

mSphere. 2016 Feb 17;1(1). pii: e00070-15. doi: 10.1128/mSphere.00070-15. eCollection 2016 Jan-Feb.

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