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Items: 1 to 20 of 49


Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic Relatedness.

Phillips KN, Widmann S, Lai HY, Nguyen J, Ray JCJ, Balázsi G, Cooper TF.

MBio. 2019 Nov 12;10(6). pii: e02232-19. doi: 10.1128/mBio.02232-19.


A nucleotide resolution map of Top2-linked DNA breaks in the yeast and human genome.

Gittens WH, Johnson DJ, Allison RM, Cooper TJ, Thomas H, Neale MJ.

Nat Commun. 2019 Oct 24;10(1):4846. doi: 10.1038/s41467-019-12802-5.


The fitness challenge of studying molecular adaptation.

Coombes D, Moir JWB, Poole AM, Cooper TF, Dobson RCJ.

Biochem Soc Trans. 2019 Oct 31;47(5):1533-1542. doi: 10.1042/BST20180626.


Environment changes epistasis to alter trade-offs along alternative evolutionary paths.

Hall AE, Karkare K, Cooper VS, Bank C, Cooper TF, Moore FB.

Evolution. 2019 Oct;73(10):2094-2105. doi: 10.1111/evo.13825. Epub 2019 Sep 12.


Predicting microbial growth in a mixed culture from growth curve data.

Ram Y, Dellus-Gur E, Bibi M, Karkare K, Obolski U, Feldman MW, Cooper TF, Berman J, Hadany L.

Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14698-14707. doi: 10.1073/pnas.1902217116. Epub 2019 Jun 28.


An assessment of achievements of the WEEE Directive in promoting movement up the waste hierarchy: experiences in the UK.

Cole C, Gnanapragasam A, Cooper T, Singh J.

Waste Manag. 2019 Mar 15;87:417-427. doi: 10.1016/j.wasman.2019.01.046. Epub 2019 Feb 19.


The influence of depth and a subsea pipeline on fish assemblages and commercially fished species.

Bond T, Partridge JC, Taylor MD, Cooper TF, McLean DL.

PLoS One. 2018 Nov 26;13(11):e0207703. doi: 10.1371/journal.pone.0207703. eCollection 2018.


Association of Fludeoxyglucose F 18-Labeled Positron Emission Tomography and Computed Tomography With the Detection of Oropharyngeal Cancer Recurrence.

Sivarajah S, Isaac A, Cooper T, Zhang H, Puttagunta L, Abele J, Biron V, Harris J, Seikaly H, O' Connell DA.

JAMA Otolaryngol Head Neck Surg. 2018 Nov 1;144(11):1037-1043. doi: 10.1001/jamaoto.2018.2143.


Effects of Beneficial Mutations in pykF Gene Vary over Time and across Replicate Populations in a Long-Term Experiment with Bacteria.

Peng F, Widmann S, Wünsche A, Duan K, Donovan KA, Dobson RCJ, Lenski RE, Cooper TF.

Mol Biol Evol. 2018 Jan 1;35(1):202-210. doi: 10.1093/molbev/msx279.


Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory.

Wünsche A, Dinh DM, Satterwhite RS, Arenas CD, Stoebel DM, Cooper TF.

Nat Ecol Evol. 2017 Mar 1;1(4):61. doi: 10.1038/s41559-016-0061.


A conceptual framework for negotiating public involvement in municipal waste management decision-making in the UK.

Garnett K, Cooper T, Longhurst P, Jude S, Tyrrel S.

Waste Manag. 2017 Aug;66:210-221. doi: 10.1016/j.wasman.2017.04.022. Epub 2017 Apr 13.


Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness.

Wang Y, Diaz Arenas C, Stoebel DM, Flynn K, Knapp E, Dillon MM, Wünsche A, Hatcher PJ, Moore FB, Cooper VS, Cooper TF.

Proc Natl Acad Sci U S A. 2016 May 3;113(18):5047-52. doi: 10.1073/pnas.1524988113. Epub 2016 Apr 18.


Grappling with anisotropic data, pseudo-merohedral twinning and pseudo-translational noncrystallographic symmetry: a case study involving pyruvate kinase.

Donovan KA, Atkinson SC, Kessans SA, Peng F, Cooper TF, Griffin MD, Jameson GB, Dobson RC.

Acta Crystallogr D Struct Biol. 2016 Apr;72(Pt 4):512-9. doi: 10.1107/S205979831600142X. Epub 2016 Mar 24.


Cellular Growth Arrest and Persistence from Enzyme Saturation.

Ray JC, Wickersheim ML, Jalihal AP, Adeshina YO, Cooper TF, Balázsi G.

PLoS Comput Biol. 2016 Mar 24;12(3):e1004825. doi: 10.1371/journal.pcbi.1004825. eCollection 2016 Mar.


Adaptation of Escherichia coli to glucose promotes evolvability in lactose.

Phillips KN, Castillo G, Wünsche A, Cooper TF.

Evolution. 2016 Feb;70(2):465-70. doi: 10.1111/evo.12849. Epub 2016 Jan 29.


Meiotic DSB patterning: A multifaceted process.

Cooper TJ, Garcia V, Neale MJ.

Cell Cycle. 2016;15(1):13-21. doi: 10.1080/15384101.2015.1093709. Review.


Correlation of PET-CT nodal SUVmax with p16 positivity in oropharyngeal squamous cell carcinoma.

Clark J, Jeffery CC, Zhang H, Cooper T, O'Connell DA, Harris J, Seikaly H, Biron VL.

J Otolaryngol Head Neck Surg. 2015 Sep 15;44:37. doi: 10.1186/s40463-015-0091-5.


Constraints on adaptation of Escherichia coli to mixed-resource environments increase over time.

Satterwhite RS, Cooper TF.

Evolution. 2015 Aug;69(8):2067-78. doi: 10.1111/evo.12710. Epub 2015 Jul 21.


Tel1(ATM)-mediated interference suppresses clustered meiotic double-strand-break formation.

Garcia V, Gray S, Allison RM, Cooper TJ, Neale MJ.

Nature. 2015 Apr 2;520(7545):114-8. doi: 10.1038/nature13993. Epub 2015 Jan 5.


Systematic perturbation of cytoskeletal function reveals a linear scaling relationship between cell geometry and fitness.

Monds RD, Lee TK, Colavin A, Ursell T, Quan S, Cooper TF, Huang KC.

Cell Rep. 2014 Nov 20;9(4):1528-37. doi: 10.1016/j.celrep.2014.10.040. Epub 2014 Nov 13.

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