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Items: 1 to 20 of 54


Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes.

Conte MA, Joshi R, Moore EC, Nandamuri SP, Gammerdinger WJ, Roberts RB, Carleton KL, Lien S, Kocher TD.

Gigascience. 2019 Apr 1;8(4). pii: giz030. doi: 10.1093/gigascience/giz030.


Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes.

Clark FE, Conte MA, Kocher TD.

Genes (Basel). 2018 Dec 5;9(12). pii: E610. doi: 10.3390/genes9120610.


Unusual Diversity of Sex Chromosomes in African Cichlid Fishes.

Gammerdinger WJ, Kocher TD.

Genes (Basel). 2018 Oct 4;9(10). pii: E480. doi: 10.3390/genes9100480. Review.


Understanding Student Perceptions and Practices for Pre-Lecture Content Reading in the Genetics Classroom.

Gammerdinger WJ, Kocher TD.

J Microbiol Biol Educ. 2018 Jul 31;19(2). pii: jmbe-19-79. doi: 10.1128/jmbe.v19i2.1371. eCollection 2018.


Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis.

Tao W, Chen J, Tan D, Yang J, Sun L, Wei J, Conte MA, Kocher TD, Wang D.

BMC Genomics. 2018 May 15;19(1):363. doi: 10.1186/s12864-018-4756-0.


Novel Sex Chromosomes in 3 Cichlid Fishes from Lake Tanganyika.

Gammerdinger WJ, Conte MA, Sandkam BA, Ziegelbecker A, Koblmüller S, Kocher TD.

J Hered. 2018 Jun 27;109(5):489-500. doi: 10.1093/jhered/esy003.


A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions.

Conte MA, Gammerdinger WJ, Bartie KL, Penman DJ, Kocher TD.

BMC Genomics. 2017 May 2;18(1):341. doi: 10.1186/s12864-017-3723-5.


An allelic series at pax7a is associated with colour polymorphism diversity in Lake Malawi cichlid fish.

Roberts RB, Moore EC, Kocher TD.

Mol Ecol. 2017 May;26(10):2625-2639. doi: 10.1111/mec.13975. Epub 2017 Jan 21.


Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron.

Gammerdinger WJ, Conte MA, Baroiller JF, D'Cotta H, Kocher TD.

BMC Genomics. 2016 Oct 18;17(1):808.


Dynamic Sequence Evolution of a Sex-Associated B Chromosome in Lake Malawi Cichlid Fish.

Clark FE, Conte MA, Ferreira-Bravo IA, Poletto AB, Martins C, Kocher TD.

J Hered. 2017 Jan;108(1):53-62. Epub 2016 Sep 14.


Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation.

Tao W, Sun L, Shi H, Cheng Y, Jiang D, Fu B, Conte MA, Gammerdinger WJ, Kocher TD, Wang D.

BMC Genomics. 2016 May 4;17:328. doi: 10.1186/s12864-016-2636-z.


A Tandem Duplicate of Anti-Müllerian Hormone with a Missense SNP on the Y Chromosome Is Essential for Male Sex Determination in Nile Tilapia, Oreochromis niloticus.

Li M, Sun Y, Zhao J, Shi H, Zeng S, Ye K, Jiang D, Zhou L, Sun L, Tao W, Nagahama Y, Kocher TD, Wang D.

PLoS Genet. 2015 Nov 20;11(11):e1005678. doi: 10.1371/journal.pgen.1005678. eCollection 2015 Nov.


An improved genome reference for the African cichlid, Metriaclima zebra.

Conte MA, Kocher TD.

BMC Genomics. 2015 Sep 22;16:724. doi: 10.1186/s12864-015-1930-5.


Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus.

Gammerdinger WJ, Conte MA, Acquah EA, Roberts RB, Kocher TD.

BMC Genomics. 2014 Nov 17;15:975. doi: 10.1186/1471-2164-15-975.


The genomic substrate for adaptive radiation in African cichlid fish.

Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alföldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleton KL, Conte MA, D'Cotta H, Eshel O, Gaffney L, Galibert F, Gante HF, Gnerre S, Greuter L, Guyon R, Haddad NS, Haerty W, Harris RM, Hofmann HA, Hourlier T, Hulata G, Jaffe DB, Lara M, Lee AP, MacCallum I, Mwaiko S, Nikaido M, Nishihara H, Ozouf-Costaz C, Penman DJ, Przybylski D, Rakotomanga M, Renn SCP, Ribeiro FJ, Ron M, Salzburger W, Sanchez-Pulido L, Santos ME, Searle S, Sharpe T, Swofford R, Tan FJ, Williams L, Young S, Yin S, Okada N, Kocher TD, Miska EA, Lander ES, Venkatesh B, Fernald RD, Meyer A, Ponting CP, Streelman JT, Lindblad-Toh K, Seehausen O, Di Palma F.

Nature. 2014 Sep 18;513(7518):375-381. doi: 10.1038/nature13726. Epub 2014 Sep 3.


Origin and evolution of B chromosomes in the cichlid fish Astatotilapia latifasciata based on integrated genomic analyses.

Valente GT, Conte MA, Fantinatti BE, Cabral-de-Mello DC, Carvalho RF, Vicari MR, Kocher TD, Martins C.

Mol Biol Evol. 2014 Aug;31(8):2061-72. doi: 10.1093/molbev/msu148. Epub 2014 Apr 26.


Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra.

O'Quin CT, Drilea AC, Conte MA, Kocher TD.

BMC Genomics. 2013 Apr 27;14:287. doi: 10.1186/1471-2164-14-287.


Lineage-specific expansion of vomeronasal type 2 receptor-like (OlfC) genes in cichlids may contribute to diversification of amino acid detection systems.

Nikaido M, Suzuki H, Toyoda A, Fujiyama A, Hagino-Yamagishi K, Kocher TD, Carleton K, Okada N.

Genome Biol Evol. 2013;5(4):711-22. doi: 10.1093/gbe/evt041.


Origins of shared genetic variation in African cichlids.

Loh YH, Bezault E, Muenzel FM, Roberts RB, Swofford R, Barluenga M, Kidd CE, Howe AE, Di Palma F, Lindblad-Toh K, Hey J, Seehausen O, Salzburger W, Kocher TD, Streelman JT.

Mol Biol Evol. 2013 Apr;30(4):906-17. doi: 10.1093/molbev/mss326. Epub 2012 Dec 28.


A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs.

Guyon R, Rakotomanga M, Azzouzi N, Coutanceau JP, Bonillo C, D'Cotta H, Pepey E, Soler L, Rodier-Goud M, D'Hont A, Conte MA, van Bers NE, Penman DJ, Hitte C, Crooijmans RP, Kocher TD, Ozouf-Costaz C, Baroiller JF, Galibert F.

BMC Genomics. 2012 Jun 6;13:222. doi: 10.1186/1471-2164-13-222.

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